UHGV-0132662

Genome information

Genome length 51,355 bps

CDS count 93

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132662
vOTU ID	vOTU-001665
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_389580
BioSample	SAMN04329778
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.32
Jumbo phage	No

Genome content
Genome length	51,355 bps
GC content	33.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	93
CDS density	91.49%
Average CDS length	508.61 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132662_3	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0132662_3	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0132662_3	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0132662_3	eggNOG-mapper	931626.Awo_c24320	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0132662_3	PADLOC	drt-UG29	DRT	DRT
UHGV-0132662_3	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0132662_3	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0132662_3	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0132662_3	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0132662_5	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-0132662_9	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0132662_12	PHROG	phrog_15863	NA	unknown function
UHGV-0132662_12	UniRef90	UniRef90_A0A417CWJ3	J domain-containing protein	NA
UHGV-0132662_12	eggNOG-mapper	397288.C806_01234	DnaJ molecular chaperone homology domain	NA
UHGV-0132662_12	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0132662_14	Structural annotation	PF00210, NF007638, COG1528	NA	NA
UHGV-0132662_15	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0132662_16	PHROG	phrog_16490	NA	unknown function
UHGV-0132662_16	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0132662_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0132662_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0132662_19	Structural annotation	PF04545, MF_00674, NF008895, COG2739	NA	NA
UHGV-0132662_22	eggNOG-mapper	1688.BCUN_1858	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0132662_22	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0132662_22	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0132662_22	Structural annotation	PF09479, PF00703, NF033188	NA	NA
UHGV-0132662_23	PHROG	phrog_1220	head protein	head and packaging
UHGV-0132662_23	eggNOG-mapper	768704.Desmer_4452	COG NOG18825 non supervised orthologous group	NA
UHGV-0132662_23	Structural annotation	PF20747	NA	NA
UHGV-0132662_24	PHROG	phrog_538	minor tail protein	tail
UHGV-0132662_24	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0132662_24	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0132662_24	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0132662_25	PHROG	phrog_36410	NA	unknown function
UHGV-0132662_25	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0132662_25	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0132662_26	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0132662_26	UniRef90	UniRef90_A0A7U9JT69	Phage tail tape measure protein, TP901 family	NA
UHGV-0132662_26	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-0132662_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0132662_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0132662_26	COG	COG5283	Phage-related tail protein	NA
UHGV-0132662_26	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-0132662_27	PHROG	phrog_6280	NA	unknown function
UHGV-0132662_27	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0132662_27	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0132662_28	PHROG	phrog_6686	tail tube protein	tail
UHGV-0132662_28	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0132662_28	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0132662_28	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0132662_29	PHROG	phrog_7585	NA	unknown function
UHGV-0132662_29	eggNOG-mapper	1443122.Z958_05865	NA	NA
UHGV-0132662_29	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0132662_30	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0132662_30	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0132662_31	PHROG	phrog_8435	NA	unknown function
UHGV-0132662_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0132662_32	PHROG	phrog_4020	NA	unknown function
UHGV-0132662_32	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-0132662_33	Structural annotation	PF07498	NA	NA
UHGV-0132662_34	PHROG	phrog_29	major head protein	head and packaging
UHGV-0132662_34	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0132662_34	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0132662_34	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0132662_34	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0132662_35	PHROG	phrog_909	major head protein	head and packaging
UHGV-0132662_35	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-0132662_35	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0132662_35	Structural annotation	PF02924	NA	NA
UHGV-0132662_36	Structural annotation	MF_02110	NA	NA
UHGV-0132662_39	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0132662_39	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-0132662_39	eggNOG-mapper	1121342.AUCO01000012_gene1699	NA	NA
UHGV-0132662_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0132662_41	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0132662_41	eggNOG-mapper	1567015.A0A0A7RUQ6_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0132662_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0132662_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0132662_42	PHROG	phrog_21357	endolysin	lysis
UHGV-0132662_42	UniRef90	UniRef90_D4MVQ6	CHAP domain	NA
UHGV-0132662_42	eggNOG-mapper	1007096.BAGW01000017_gene816	CHAP domain	NA
UHGV-0132662_42	Pfam	PF05257	CHAP domain	CHAP
UHGV-0132662_42	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0132662_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0132662_42	Structural annotation	PF01471, TIGR02594, NF038080, COG3409	NA	NA
UHGV-0132662_43	PHROG	phrog_443	holin	lysis
UHGV-0132662_43	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0132662_43	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0132662_43	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0132662_43	Structural annotation	PF16945	NA	NA
UHGV-0132662_44	PHROG	phrog_1009	NA	unknown function
UHGV-0132662_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0132662_47	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0132662_47	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0132662_47	eggNOG-mapper	1443122.Z958_p0035	Phage terminase, large subunit, PBSX family	NA
UHGV-0132662_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0132662_47	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0132662_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0132662_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0132662_47	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0132662_50	PHROG	phrog_22292	NA	unknown function
UHGV-0132662_54	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0132662_54	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0132662_54	UniRef90	UniRef90_A0A7X7EF94	Methyltransferase	NA
UHGV-0132662_54	eggNOG-mapper	1379698.RBG1_1C00001G1868	DNA methylase	NA
UHGV-0132662_54	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0132662_54	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0132662_54	COG	COG0863	DNA modification methylase	NA
UHGV-0132662_54	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0132662_55	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0132662_55	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0132662_55	UniRef90	UniRef90_A0A481W3T4	ParB domain-containing protein	NA
UHGV-0132662_55	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0132662_55	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0132662_55	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0132662_55	COG	COG0863	DNA modification methylase	NA
UHGV-0132662_55	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0132662_57	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0132662_57	UniRef90	UniRef90_A0A373NRP8	MazG domain-containing protein	NA
UHGV-0132662_57	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0132662_58	PHROG	phrog_26445	NA	unknown function
UHGV-0132662_58	eggNOG-mapper	97139.C824_05982	NA	NA
UHGV-0132662_59	PHROG	phrog_2412	NA	unknown function
UHGV-0132662_62	Structural annotation	PF14084	NA	NA
UHGV-0132662_63	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0132662_63	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0132662_63	UniRef90	UniRef90_A0A2R6Y461	Ribonuclease H	NA
UHGV-0132662_63	eggNOG-mapper	632518.Calow_1132	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0132662_63	Pfam	PF00075	RNase H	RNase_H
UHGV-0132662_63	COG	COG0328	Ribonuclease HI	NA
UHGV-0132662_63	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0132662_64	Structural annotation	PF10922	NA	NA
UHGV-0132662_67	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0132662_68	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0132662_68	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0132662_72	Structural annotation	PF18275	NA	NA
UHGV-0132662_73	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0132662_73	UniRef90	UniRef90_A0A374ABN1	DNA_ligase_aden domain-containing protein	NA
UHGV-0132662_73	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-0132662_79	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0132662_79	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0132662_80	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0132662_80	PHROG	phrog_5696	NA	unknown function
UHGV-0132662_80	UniRef90	UniRef90_A0A6N9P8V9	SAM-dependent DNA methyltransferase	NA
UHGV-0132662_80	eggNOG-mapper	665950.HMPREF1025_01959	N-6 DNA Methylase	NA
UHGV-0132662_80	PADLOC	MTase_I_00004	Type I methyltransferase	RM
UHGV-0132662_80	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0132662_80	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0132662_80	Structural annotation	COG0286	NA	NA
UHGV-0132662_81	Structural annotation	PF18358	NA	NA
UHGV-0132662_84	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0132662_84	UniRef90	UniRef90_A0A2N5H4R9	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0132662_84	eggNOG-mapper	1235793.C809_00185	NA	NA
UHGV-0132662_87	PHROG	phrog_2506	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132662_87	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0132662_88	Structural annotation	PF01775, MF_00273, NF010188, COG2157	NA	NA
UHGV-0132662_89	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0132662_89	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0132662_89	UniRef90	UniRef90_UPI001BCFCE00	recombinase RecA	NA
UHGV-0132662_89	eggNOG-mapper	469616.FMAG_02276	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0132662_89	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0132662_89	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0132662_89	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0132662_90	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0132662_90	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0132662_90	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0132662_90	eggNOG-mapper	1123371.ATXH01000024_gene1024	Bacterial DNA polymerase III alpha subunit	NA
UHGV-0132662_90	Pfam	PF02811	PHP domain	PHP
UHGV-0132662_90	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0132662_90	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0132662_90	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0132662_90	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0132662_90	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0132662_90	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA