UHGV-0132687

Genome information

vOTU vOTU-020580

Genome length 18,403 bps

CDS count 28

Completeness 81.36% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132687
vOTU ID	vOTU-020580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_373193
BioSample	SAMN03418252
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.91
Jumbo phage	No

Genome content
Genome length	18,403 bps
GC content	39.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	91.70%
Average CDS length	605.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132687_1	UniRef90	UniRef90_A0A7L9BLD3	HNH endonuclease	NA
UHGV-0132687_1	eggNOG-mapper	1313421.JHBV01000143_gene1140	HNH endonuclease	NA
UHGV-0132687_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0132687_3	KOfam	K00018	hprA; glycerate dehydrogenase [EC:1.1.1.29]	NA
UHGV-0132687_3	PHROG	phrog_26092	NA	unknown function
UHGV-0132687_3	UniRef90	UniRef90_A0A6N2RHJ2	Glycerate dehydrogenase	NA
UHGV-0132687_3	eggNOG-mapper	1235800.C819_03700	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	NA
UHGV-0132687_3	Pfam	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	2-Hacid_dh_C
UHGV-0132687_3	COG	COG1052	Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase	NA
UHGV-0132687_5	PHROG	phrog_2150	terminase	head and packaging
UHGV-0132687_5	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0132687_5	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0132687_5	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0132687_5	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0132687_6	PHROG	phrog_199	holin	lysis
UHGV-0132687_6	UniRef90	UniRef90_A0A285PUE3	Bacteriophage holin family	NA
UHGV-0132687_6	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0132687_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0132687_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0132687_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0132687_7	Structural annotation	PF11418	NA	NA
UHGV-0132687_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0132687_8	UniRef90	UniRef90_A0A843HGP3	Ig-like domain-containing protein	NA
UHGV-0132687_8	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0132687_8	Structural annotation	PF21703, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0132687_9	PHROG	phrog_2248	tail protein	tail
UHGV-0132687_9	UniRef90	UniRef90_A0A843GL83	Caud_tail_N domain-containing protein	NA
UHGV-0132687_9	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0132687_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0132687_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0132687_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0132687_10	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0132687_10	PHROG	phrog_6700	endolysin	lysis
UHGV-0132687_10	UniRef90	UniRef90_A0A8A2JE39	M23 family metallopeptidase	NA
UHGV-0132687_10	eggNOG-mapper	411471.SUBVAR_05681	Peptidase, M23	NA
UHGV-0132687_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0132687_10	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0132687_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0132687_11	UniRef90	UniRef90_A0A514AAQ6	Upper collar protein	NA
UHGV-0132687_11	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0132687_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0132687_11	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0132687_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0132687_15	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
UHGV-0132687_16	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0132687_16	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0132687_16	UniRef90	UniRef90_A0A357TR03	Peptidase_M23 domain-containing protein	NA
UHGV-0132687_16	eggNOG-mapper	696369.KI912183_gene1810	PFAM Peptidase family M23	NA
UHGV-0132687_16	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0132687_16	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0132687_18	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0132687_18	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0132687_18	UniRef90	UniRef90_A0A1W7M4V8	DNA-directed DNA polymerase	NA
UHGV-0132687_18	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0132687_18	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0132687_18	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0132687_20	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132687_20	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-0132687_20	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0132687_20	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0132687_20	Structural annotation	PF17427	NA	NA
UHGV-0132687_21	Structural annotation	PF17548	NA	NA