UHGV-0132868

Genome information

Genome length 42,312 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0132868
vOTU ID	vOTU-007625
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_391389
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.21
Jumbo phage	No

Genome content
Genome length	42,312 bps
GC content	43.14%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.03%
Average CDS length	634.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0132868_1	UniRef90	UniRef90_UPI00195F8302	tetratricopeptide repeat protein	NA
UHGV-0132868_1	eggNOG-mapper	742735.HMPREF9467_01579	NA	NA
UHGV-0132868_2	eggNOG-mapper	663278.Ethha_0092	NA	NA
UHGV-0132868_3	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0132868_3	PHROG	phrog_1794	amidase	lysis
UHGV-0132868_3	UniRef90	UniRef90_A0A1C5QWL7	N-acetylmuramoyl-L-alanine amidase AmiD	NA
UHGV-0132868_3	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0132868_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0132868_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0132868_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0132868_4	PHROG	phrog_199	holin	lysis
UHGV-0132868_4	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0132868_4	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0132868_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0132868_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0132868_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0132868_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0132868_5	PHROG	phrog_16164	NA	unknown function
UHGV-0132868_5	eggNOG-mapper	86416.Clopa_2555	lipolytic protein G-D-S-L family	NA
UHGV-0132868_5	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0132868_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0132868_6	PHROG	phrog_22212	NA	unknown function
UHGV-0132868_6	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0132868_6	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0132868_6	COG	COG4926	Phage-related protein	NA
UHGV-0132868_7	PHROG	phrog_1194	NA	unknown function
UHGV-0132868_7	UniRef90	UniRef90_A0A0Z8JCS0	NA	NA
UHGV-0132868_7	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0132868_7	Pfam	PF20458	NA	DUF6711
UHGV-0132868_7	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0132868_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0132868_8	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0132868_8	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0132868_8	COG	COG5283	Phage-related tail protein	NA
UHGV-0132868_9	PHROG	phrog_2066	NA	unknown function
UHGV-0132868_10	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0132868_10	UniRef90	UniRef90_UPI00156E7CD5	NA	NA
UHGV-0132868_10	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0132868_10	Pfam	PF19591	NA	DUF6096
UHGV-0132868_10	Structural annotation	PF19591	NA	NA
UHGV-0132868_11	PHROG	phrog_158	major tail protein	tail
UHGV-0132868_11	UniRef90	UniRef90_UPI00156F5797	phage tail protein	NA
UHGV-0132868_11	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0132868_11	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0132868_11	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0132868_12	PHROG	phrog_78	tail terminator	connector
UHGV-0132868_12	eggNOG-mapper	1499683.CCFF01000014_gene3904	NA	NA
UHGV-0132868_12	Structural annotation	PF05657	NA	NA
UHGV-0132868_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0132868_13	UniRef90	UniRef90_UPI001D01C150	HK97 gp10 family phage protein	NA
UHGV-0132868_13	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0132868_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0132868_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0132868_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0132868_14	PHROG	phrog_2168	NA	unknown function
UHGV-0132868_14	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0132868_14	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0132868_15	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0132868_15	UniRef90	UniRef90_UPI00156F0BDA	phage head-tail connector protein	NA
UHGV-0132868_15	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0132868_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0132868_15	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0132868_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0132868_16	UniRef90	UniRef90_UPI00156DFF0E	coat protein	NA
UHGV-0132868_16	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0132868_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0132868_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0132868_17	UniRef90	UniRef90_UPI00156EF0C7	NA	NA
UHGV-0132868_17	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0132868_17	Pfam	PF14265	NA	DUF4355
UHGV-0132868_17	Structural annotation	PF14265	NA	NA
UHGV-0132868_18	PHROG	phrog_13199	NA	unknown function
UHGV-0132868_18	eggNOG-mapper	476272.RUMHYD_02851	NA	NA
UHGV-0132868_19	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0132868_19	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0132868_19	eggNOG-mapper	521003.COLINT_02327	NA	NA
UHGV-0132868_20	PHROG	phrog_918	NA	unknown function
UHGV-0132868_20	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0132868_20	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0132868_20	Pfam	PF19791	NA	DUF6275
UHGV-0132868_20	Structural annotation	PF19791	NA	NA
UHGV-0132868_21	PHROG	phrog_1048	NA	unknown function
UHGV-0132868_21	UniRef90	UniRef90_A0A2V2D8W4	NA	NA
UHGV-0132868_21	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0132868_21	Pfam	PF11195	NA	DUF2829
UHGV-0132868_21	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0132868_21	Structural annotation	PF11195	NA	NA
UHGV-0132868_23	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0132868_23	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0132868_23	UniRef90	UniRef90_UPI00156F56E8	ORF6C domain-containing protein	NA
UHGV-0132868_23	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-0132868_23	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0132868_23	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0132868_23	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0132868_23	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0132868_24	UniRef90	UniRef90_A0A0A8WED4	Ribbon-helix-helix protein, copG family	NA
UHGV-0132868_24	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0132868_24	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0132868_25	PHROG	phrog_3675	NA	unknown function
UHGV-0132868_25	UniRef90	UniRef90_A0A1M7JY59	YjcQ protein	NA
UHGV-0132868_25	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0132868_25	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0132868_25	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0132868_26	Structural annotation	PF11344	NA	NA
UHGV-0132868_27	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0132868_27	UniRef90	UniRef90_UPI00157127C3	minor capsid protein	NA
UHGV-0132868_27	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0132868_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0132868_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0132868_27	COG	COG2369	NA	NA
UHGV-0132868_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0132868_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0132868_28	UniRef90	UniRef90_A0A2V2D7F4	Phage portal protein	NA
UHGV-0132868_28	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0132868_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0132868_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0132868_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0132868_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0132868_29	PHROG	phrog_10250	NA	unknown function
UHGV-0132868_29	UniRef90	UniRef90_A0A2V2D9F3	PBSX family phage terminase large subunit	NA
UHGV-0132868_29	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0132868_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0132868_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0132868_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0132868_29	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0132868_30	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0132868_30	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0132868_30	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0132868_30	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0132868_30	Structural annotation	PF16677	NA	NA
UHGV-0132868_32	PHROG	phrog_9479	NA	unknown function
UHGV-0132868_32	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0132868_34	PHROG	phrog_8680	NA	unknown function
UHGV-0132868_34	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0132868_34	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0132868_34	Pfam	PF14386	NA	DUF4417
UHGV-0132868_34	Structural annotation	PF14386	NA	NA
UHGV-0132868_35	PHROG	phrog_11237	NA	unknown function
UHGV-0132868_35	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0132868_39	eggNOG-mapper	1035196.HMPREF9998_01732	NA	NA
UHGV-0132868_40	PHROG	phrog_8684	NA	unknown function
UHGV-0132868_40	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0132868_40	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0132868_40	Pfam	PF09643	YopX protein	YopX
UHGV-0132868_40	Pfam	PF04448	NA	DUF551
UHGV-0132868_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0132868_42	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0132868_42	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0132868_42	UniRef90	UniRef90_UPI001C026824	single-stranded DNA-binding protein	NA
UHGV-0132868_42	eggNOG-mapper	658088.HMPREF0987_02000	Single-strand binding protein family	NA
UHGV-0132868_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0132868_42	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0132868_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0132868_42	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0132868_42	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0132868_43	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0132868_43	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0132868_43	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0132868_43	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0132868_43	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0132868_43	COG	COG3617	Prophage antirepressor	NA
UHGV-0132868_43	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0132868_44	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0132868_44	UniRef90	UniRef90_UPI0015704587	NA	NA
UHGV-0132868_44	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0132868_44	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0132868_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0132868_44	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0132868_45	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0132868_45	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0132868_45	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0132868_45	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0132868_45	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0132868_45	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0132868_45	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0132868_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0132868_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0132868_46	UniRef90	UniRef90_UPI00156E3AA2	recombinase RecT	NA
UHGV-0132868_46	eggNOG-mapper	658088.HMPREF0987_00529	RecT family	NA
UHGV-0132868_46	Pfam	PF03837	RecT family	RecT
UHGV-0132868_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0132868_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0132868_46	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0132868_47	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0132868_47	UniRef90	UniRef90_UPI0015715373	YqaJ viral recombinase family protein	NA
UHGV-0132868_47	eggNOG-mapper	411902.CLOBOL_00693	YqaJ-like viral recombinase domain	NA
UHGV-0132868_47	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0132868_47	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0132868_47	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0132868_47	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0132868_49	PHROG	phrog_5070	NA	unknown function
UHGV-0132868_49	UniRef90	UniRef90_UPI00189ACE43	polymer-forming cytoskeletal protein	NA
UHGV-0132868_49	eggNOG-mapper	887929.HMP0721_1276	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0132868_49	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0132868_49	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0132868_50	Structural annotation	PF19128	NA	NA
UHGV-0132868_51	PHROG	phrog_3777	NA	unknown function
UHGV-0132868_51	UniRef90	UniRef90_UPI00142FF24A	NA	NA
UHGV-0132868_51	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0132868_51	Structural annotation	PF18441	NA	NA
UHGV-0132868_53	UniRef90	UniRef90_UPI00156FF8C8	helix-turn-helix domain-containing protein	NA
UHGV-0132868_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0132868_53	Structural annotation	PF13744, MF_00535, NF010465, COG3655	NA	NA
UHGV-0132868_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0132868_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0132868_56	UniRef90	UniRef90_UPI00191710C2	helix-turn-helix transcriptional regulator	NA
UHGV-0132868_56	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0132868_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132868_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0132868_56	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0132868_58	UniRef90	UniRef90_A0A1C6J701	Helix-turn-helix	NA
UHGV-0132868_58	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0132868_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0132868_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0132868_59	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0132868_59	UniRef90	UniRef90_UPI0015700369	restriction endonuclease	NA
UHGV-0132868_59	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-0132868_59	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0132868_59	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0132868_59	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0132868_60	PHROG	phrog_5319	outer membrane protein	other
UHGV-0132868_60	UniRef90	UniRef90_UPI00156DD7EE	zinc ribbon domain-containing protein	NA
UHGV-0132868_60	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0132868_60	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0132868_61	KOfam	K14059	int; integrase	NA
UHGV-0132868_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0132868_61	UniRef90	UniRef90_UPI00156E983E	site-specific integrase	NA
UHGV-0132868_61	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0132868_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0132868_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0132868_61	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA