UHGV-0133059

Genome information

Genome length 31,881 bps

CDS count 39

Completeness 75.82% (medium-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133059
vOTU ID	vOTU-026492
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_354053
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.82% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.96
Jumbo phage	No

Genome content
Genome length	31,881 bps
GC content	31.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.44%
Average CDS length	759.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133059_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0133059_1	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133059_1	UniRef90	UniRef90_UPI0009888C99	HNH endonuclease	NA
UHGV-0133059_1	eggNOG-mapper	1536769.P40081_28570	HNH nucleases	NA
UHGV-0133059_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133059_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133059_1	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0133059_3	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0133059_3	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0133059_3	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0133059_6	eggNOG-mapper	796940.HMPREF9628_01560	NA	NA
UHGV-0133059_6	Pfam	PF05339	NA	DUF739
UHGV-0133059_7	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133059_7	PHROG	phrog_435	endolysin	lysis
UHGV-0133059_7	UniRef90	UniRef90_A0A3C1Q8N2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133059_7	eggNOG-mapper	632518.Calow_0882	PFAM cell wall hydrolase autolysin	NA
UHGV-0133059_7	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0133059_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133059_7	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0133059_14	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0133059_14	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0133059_14	UniRef90	UniRef90_UPI001C380652	DEAD/DEAH box helicase	NA
UHGV-0133059_14	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0133059_14	PADLOC	DpdE_00003	DpdE	DPD
UHGV-0133059_14	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0133059_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0133059_14	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0133059_14	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0133059_15	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133059_15	UniRef90	UniRef90_A0A1W1UZF4	VRR-NUC domain-containing protein	NA
UHGV-0133059_15	eggNOG-mapper	562981.HMPREF0428_01004	VRR_NUC	NA
UHGV-0133059_15	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0133059_15	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0133059_16	PHROG	phrog_8097	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133059_16	UniRef90	UniRef90_UPI0003B19C47	PD-(D/E)XK nuclease family protein	NA
UHGV-0133059_16	eggNOG-mapper	445335.CBN_1356	AAA domain	NA
UHGV-0133059_16	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0133059_16	COG	COG2887	RecB family exonuclease	NA
UHGV-0133059_17	PHROG	phrog_8097	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133059_17	UniRef90	UniRef90_UPI001F43F7F0	ATP-binding protein	NA
UHGV-0133059_17	eggNOG-mapper	445335.CBN_1356	AAA domain	NA
UHGV-0133059_17	Pfam	PF13479	AAA domain	AAA_24
UHGV-0133059_17	COG	COG2887	RecB family exonuclease	NA
UHGV-0133059_18	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133059_18	UniRef90	UniRef90_UPI001C389F24	NA	NA
UHGV-0133059_18	eggNOG-mapper	1280692.AUJL01000009_gene2993	NA	NA
UHGV-0133059_18	Pfam	PF05037	NA	DUF669
UHGV-0133059_18	Structural annotation	PF05037	NA	NA
UHGV-0133059_19	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0133059_19	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0133059_19	UniRef90	UniRef90_A0A1C6GWY9	DNA polymerase family B	NA
UHGV-0133059_19	eggNOG-mapper	935836.JAEL01000005_gene2713	DNA polymerase elongation subunit (Family B)	NA
UHGV-0133059_19	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0133059_19	Structural annotation	PF00136, MF_04100, NF004416, COG0417	NA	NA
UHGV-0133059_20	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0133059_20	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0133059_20	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-0133059_20	eggNOG-mapper	742740.HMPREF9474_02364	Phage plasmid primase, P4 family	NA
UHGV-0133059_20	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0133059_20	Pfam	PF19263	NA	DUF5906
UHGV-0133059_20	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0133059_20	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0133059_20	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0133059_20	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0133059_23	PHROG	phrog_469	tail protein	tail
UHGV-0133059_23	UniRef90	UniRef90_UPI0004E1CFF3	host specificity factor TipJ family phage tail protein	NA
UHGV-0133059_23	eggNOG-mapper	1265507.KB899636_gene1672	cellulase activity	NA
UHGV-0133059_23	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0133059_23	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0133059_23	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0133059_23	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0133059_24	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0133059_24	Structural annotation	TIGR02219	NA	NA
UHGV-0133059_25	PHROG	phrog_396	minor tail protein	tail
UHGV-0133059_25	eggNOG-mapper	1265507.KB899637_gene597	NA	NA
UHGV-0133059_25	Pfam	PF08875	NA	DUF1833
UHGV-0133059_25	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0133059_26	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0133059_26	eggNOG-mapper	1200567.JNKD01000011_gene682	NA	NA
UHGV-0133059_27	PHROG	phrog_1538	tail length tape measure protein	tail
UHGV-0133059_27	UniRef90	UniRef90_A0A2E5ESB7	TMP_3 domain-containing protein	NA
UHGV-0133059_27	eggNOG-mapper	1200567.JNKD01000011_gene681	Mu-like prophage protein	NA
UHGV-0133059_27	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0133059_27	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0133059_28	PHROG	phrog_28718	NA	unknown function
UHGV-0133059_28	UniRef90	UniRef90_A0A380TUK3	Site-specific DNA methylase	NA
UHGV-0133059_28	eggNOG-mapper	221988.MS0075	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0133059_28	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-0133059_28	COG	COG3392	Adenine-specific DNA methylase	NA
UHGV-0133059_28	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA
UHGV-0133059_30	PHROG	phrog_158	major tail protein	tail
UHGV-0133059_30	UniRef90	UniRef90_A0A662ZLA3	Phage tail tube protein family protein	NA
UHGV-0133059_30	eggNOG-mapper	1265507.KB899636_gene1664	Phage tail tube protein family	NA
UHGV-0133059_30	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0133059_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0133059_34	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0133059_34	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0133059_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0133059_35	KOfam	K06904	NA	NA
UHGV-0133059_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0133059_35	UniRef90	UniRef90_UPI001AE35DD1	phage major capsid protein	NA
UHGV-0133059_35	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0133059_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0133059_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0133059_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0133059_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0133059_35	Structural annotation	PF05065, PF04586, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0133059_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0133059_36	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0133059_36	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0133059_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0133059_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0133059_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0133059_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0133059_37	PHROG	phrog_236	nucleotide kinase	other
UHGV-0133059_37	Pfam	PF11753	NA	DUF3310
UHGV-0133059_38	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0133059_38	UniRef90	UniRef90_A0A4Q2JAZ3	Terminase large subunit	NA
UHGV-0133059_38	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0133059_38	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0133059_38	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0133059_38	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133059_38	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0133059_39	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0133059_39	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0133059_39	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0133059_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0133059_39	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0133059_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA