UHGV-0133100

Genome information

Genome length 14,653 bps

CDS count 19

Completeness 76.31% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133100
vOTU ID	vOTU-015058
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_372214
BioSample	SAMN03398991
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.45
Jumbo phage	No

Genome content
Genome length	14,653 bps
GC content	37.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	19
CDS density	89.63%
Average CDS length	692.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133100_3	Structural annotation	PF17427	NA	NA
UHGV-0133100_5	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0133100_5	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0133100_5	UniRef90	UniRef90_A0A843GX60	DNA-directed DNA polymerase	NA
UHGV-0133100_5	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0133100_5	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0133100_5	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0133100_6	PHROG	phrog_2150	terminase	head and packaging
UHGV-0133100_6	UniRef90	UniRef90_A0A843GUV2	Phage DNA encapsidation protein	NA
UHGV-0133100_6	eggNOG-mapper	1161906.I6P9K5_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0133100_6	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0133100_6	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0133100_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133100_8	PHROG	phrog_435	endolysin	lysis
UHGV-0133100_8	UniRef90	UniRef90_R6EZ54	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133100_8	eggNOG-mapper	1200792.AKYF01000027_gene655	Ami_3	NA
UHGV-0133100_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0133100_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133100_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133100_8	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0133100_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0133100_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0133100_10	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0133100_10	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0133100_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0133100_11	PHROG	phrog_2248	tail protein	tail
UHGV-0133100_11	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0133100_11	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0133100_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0133100_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0133100_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0133100_12	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0133100_12	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0133100_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0133100_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0133100_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0133100_13	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0133100_14	eggNOG-mapper	913865.DOT_3747	Pectate lyase superfamily protein	NA
UHGV-0133100_14	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0133100_14	COG	COG3386	Sugar lactone lactonase YvrE	NA
UHGV-0133100_14	Structural annotation	PF00295	NA	NA