UHGV-0133109

Genome information

Genome length 25,628 bps

CDS count 39

Completeness 64.84% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133109
vOTU ID	vOTU-028778
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_390743
BioSample	SAMN04329780
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.22
Jumbo phage	No

Genome content
Genome length	25,628 bps
GC content	27.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	96.36%
Average CDS length	635.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133109_1	eggNOG-mapper	720554.Clocl_0644	NA	NA
UHGV-0133109_1	Pfam	PF18975	NA	DUF5711
UHGV-0133109_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0133109_7	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133109_7	UniRef90	UniRef90_A0A1M5PWH2	Endodeoxyribonuclease RusA	NA
UHGV-0133109_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0133109_7	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0133109_10	PHROG	phrog_1233	NA	unknown function
UHGV-0133109_10	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0133109_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0133109_10	Structural annotation	PF13058	NA	NA
UHGV-0133109_11	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0133109_11	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0133109_11	UniRef90	UniRef90_A0A349YQ89	DNA methylase	NA
UHGV-0133109_11	eggNOG-mapper	1131462.DCF50_p1401	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0133109_11	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0133109_11	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0133109_11	COG	COG0863	DNA modification methylase	NA
UHGV-0133109_11	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0133109_12	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-0133109_12	eggNOG-mapper	508419.F8J156_9CAUD	NA	NA
UHGV-0133109_12	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0133109_12	Structural annotation	PF20691, NF041865, COG1216	NA	NA
UHGV-0133109_13	PHROG	phrog_2412	NA	unknown function
UHGV-0133109_13	UniRef90	UniRef90_R5AAQ5	NA	NA
UHGV-0133109_13	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0133109_13	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0133109_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133109_14	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0133109_14	UniRef90	UniRef90_A0A0R3JYL5	Phage terminase large subunit	NA
UHGV-0133109_14	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0133109_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0133109_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0133109_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133109_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133109_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0133109_15	KOfam	K16698	tuaG; teichuronic acid biosynthesis glycosyltransferase TuaG [EC:2.4.-.-]	NA
UHGV-0133109_15	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0133109_15	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0133109_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0133109_18	UniRef90	UniRef90_R6I230	SPP1 family phage portal protein	NA
UHGV-0133109_18	eggNOG-mapper	665956.HMPREF1032_03614	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0133109_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133109_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0133109_19	UniRef90	UniRef90_R5MSH4	Phage head morphogenesis protein SPP1 gp7 family	NA
UHGV-0133109_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0133109_19	COG	COG2369	NA	NA
UHGV-0133109_19	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0133109_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0133109_20	UniRef90	UniRef90_A0A3D1PKZ2	Phage capsid protein	NA
UHGV-0133109_20	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0133109_20	Pfam	PF14265	NA	DUF4355
UHGV-0133109_20	Structural annotation	PF14265	NA	NA
UHGV-0133109_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0133109_21	UniRef90	UniRef90_A0A844FIN2	Cadherin domain-containing protein	NA
UHGV-0133109_21	eggNOG-mapper	642492.Clole_0872	NA	NA
UHGV-0133109_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133109_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0133109_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0133109_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0133109_25	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0133109_26	Structural annotation	PF09646	NA	NA
UHGV-0133109_27	PHROG	phrog_158	major tail protein	tail
UHGV-0133109_27	UniRef90	UniRef90_UPI00096A5D14	phage tail protein	NA
UHGV-0133109_27	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0133109_27	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0133109_28	UniRef90	UniRef90_UPI0005AA54D3	NA	NA
UHGV-0133109_28	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-0133109_28	Structural annotation	PF19591	NA	NA
UHGV-0133109_30	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0133109_30	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-0133109_30	COG	COG1511	NA	NA
UHGV-0133109_31	PHROG	phrog_1194	NA	unknown function
UHGV-0133109_31	Pfam	PF20458	NA	DUF6711
UHGV-0133109_31	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0133109_32	PHROG	phrog_13879	NA	unknown function
UHGV-0133109_32	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0133109_32	Structural annotation	PF14594, PF00754, NF033848, COG3500, COG5156	NA	NA
UHGV-0133109_36	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0133109_36	PHROG	phrog_819	tail protein	tail
UHGV-0133109_36	eggNOG-mapper	546273.VEIDISOL_01078	cell wall organization	NA
UHGV-0133109_36	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0133109_36	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0133109_36	Structural annotation	PF10651	NA	NA
UHGV-0133109_39	Structural annotation	PF08281	NA	NA