UHGV-0133124

Genome information

Genome length 33,303 bps

CDS count 48

Completeness 93.49% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133124
vOTU ID	vOTU-010563
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_381252
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.49% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.16
Jumbo phage	No

Genome content
Genome length	33,303 bps
GC content	56.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	88.88%
Average CDS length	619.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133124_1	UniRef90	UniRef90_A0A1V1HYE8	UvrABC system protein B	NA
UHGV-0133124_1	eggNOG-mapper	1410668.JNKC01000011_gene1140	NA	NA
UHGV-0133124_2	KOfam	K14059	int; integrase	NA
UHGV-0133124_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0133124_2	UniRef90	UniRef90_A0A316PT36	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-0133124_2	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0133124_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133124_2	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0133124_2	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0133124_3	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0133124_3	PHROG	phrog_8036	NA	unknown function
UHGV-0133124_3	UniRef90	UniRef90_G9YU93	DNA-damage-inducible protein D family protein	NA
UHGV-0133124_3	eggNOG-mapper	1280698.AUJS01000099_gene163	BRO family, N-terminal domain	NA
UHGV-0133124_3	AcrCatalog	cluster_17589	NA	NA
UHGV-0133124_3	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0133124_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133124_3	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0133124_3	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0133124_3	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0133124_4	PHROG	phrog_9418	NA	unknown function
UHGV-0133124_4	UniRef90	UniRef90_A0A0K9GC48	Membrane protein	NA
UHGV-0133124_4	eggNOG-mapper	1235798.C817_02111	NA	NA
UHGV-0133124_4	Structural annotation	PF10233	NA	NA
UHGV-0133124_5	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0133124_5	UniRef90	UniRef90_UPI00191E8510	Ltp family lipoprotein	NA
UHGV-0133124_5	eggNOG-mapper	33035.JPJF01000109_gene437	Host cell surface-exposed lipoprotein	NA
UHGV-0133124_5	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0133124_5	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0133124_5	Structural annotation	PF02631, MF_01114, NF001056, COG2137	NA	NA
UHGV-0133124_6	PHROG	phrog_4738	transcriptional repressor	transcription regulation
UHGV-0133124_6	eggNOG-mapper	457421.CBFG_02774	Transcriptional regulator	NA
UHGV-0133124_6	COG	COG0864	Metal-responsive transcriptional regulator, contains CopG/Arc/MetJ DNA-binding domain	NA
UHGV-0133124_6	Structural annotation	TIGR04563	NA	NA
UHGV-0133124_8	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0133124_12	PHROG	phrog_585	NA	unknown function
UHGV-0133124_12	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0133124_12	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0133124_12	Pfam	PF10711	NA	DUF2513
UHGV-0133124_12	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0133124_19	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133124_19	UniRef90	UniRef90_UPI001E488EAA	helix-turn-helix domain-containing protein	NA
UHGV-0133124_19	eggNOG-mapper	742738.HMPREF9460_04047	DnaD domain protein	NA
UHGV-0133124_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133124_19	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0133124_20	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0133124_20	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0133124_20	UniRef90	UniRef90_A0A2N2CMR0	DNA helicase	NA
UHGV-0133124_20	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0133124_20	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0133124_20	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0133124_20	COG	COG0305	Replicative DNA helicase	NA
UHGV-0133124_20	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0133124_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0133124_22	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0133124_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133124_23	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0133124_23	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0133124_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0133124_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133124_24	UniRef90	UniRef90_A0A3D1WUV6	HNH endonuclease	NA
UHGV-0133124_24	eggNOG-mapper	1089548.KI783301_gene3222	HNH endonuclease	NA
UHGV-0133124_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133124_25	PHROG	phrog_1066	NA	unknown function
UHGV-0133124_25	eggNOG-mapper	500633.CLOHIR_00363	NA	NA
UHGV-0133124_25	Structural annotation	PF05119, COG1382	NA	NA
UHGV-0133124_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0133124_26	UniRef90	UniRef90_A0A1G5XL54	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133124_26	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0133124_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0133124_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0133124_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133124_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0133124_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0133124_27	UniRef90	UniRef90_A0A1H4BNH5	Phage portal protein, HK97 family	NA
UHGV-0133124_27	eggNOG-mapper	1235755.ANAM01000006_gene2373	Phage portal protein	NA
UHGV-0133124_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0133124_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0133124_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0133124_28	KOfam	K06904	NA	NA
UHGV-0133124_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0133124_28	UniRef90	UniRef90_UPI001C035284	HK97 family phage prohead protease	NA
UHGV-0133124_28	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0133124_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0133124_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0133124_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0133124_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0133124_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0133124_29	UniRef90	UniRef90_A0A1Y4UTW1	Phage major capsid protein	NA
UHGV-0133124_29	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0133124_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0133124_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0133124_29	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0133124_30	PHROG	phrog_5223	neck protein	connector
UHGV-0133124_30	UniRef90	UniRef90_A0A316QJ07	DNA-packaging protein	NA
UHGV-0133124_30	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-0133124_30	Structural annotation	TIGR01560	NA	NA
UHGV-0133124_31	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0133124_31	UniRef90	UniRef90_UPI001959FB60	phage head closure protein	NA
UHGV-0133124_31	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0133124_31	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0133124_31	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0133124_31	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0133124_32	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0133124_32	UniRef90	UniRef90_UPI000C769492	HK97 gp10 family phage protein	NA
UHGV-0133124_32	eggNOG-mapper	411468.CLOSCI_00200	COG NOG18351 non supervised orthologous group	NA
UHGV-0133124_32	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0133124_32	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0133124_33	PHROG	phrog_78	tail terminator	connector
UHGV-0133124_33	eggNOG-mapper	1280671.AUJH01000012_gene3145	NA	NA
UHGV-0133124_33	Structural annotation	PF05657	NA	NA
UHGV-0133124_34	PHROG	phrog_88	major tail protein	tail
UHGV-0133124_34	UniRef90	UniRef90_UPI0008FEA5D7	phage tail protein	NA
UHGV-0133124_34	eggNOG-mapper	1111121.HMPREF1247_1237	phage major tail protein, phi13 family	NA
UHGV-0133124_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0133124_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0133124_35	PHROG	phrog_709	NA	unknown function
UHGV-0133124_35	eggNOG-mapper	1410624.JNKK01000017_gene1983	NA	NA
UHGV-0133124_36	PHROG	phrog_3033	NA	unknown function
UHGV-0133124_36	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0133124_36	eggNOG-mapper	658088.HMPREF0987_01112	NA	NA
UHGV-0133124_37	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0133124_37	UniRef90	UniRef90_F1TFJ3	Phage tail tape measure protein, TP901 family	NA
UHGV-0133124_37	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0133124_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0133124_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0133124_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0133124_38	Structural annotation	PF20458, TIGR02241, COG3499	NA	NA
UHGV-0133124_41	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0133124_41	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0133124_42	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0133124_42	eggNOG-mapper	1121935.AQXX01000130_gene2403	Fibronectin type 3 domain	NA
UHGV-0133124_42	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0133124_43	PHROG	phrog_4105	NA	unknown function
UHGV-0133124_43	eggNOG-mapper	1394176.AWUO01000014_gene648	NA	NA
UHGV-0133124_44	PHROG	phrog_443	holin	lysis
UHGV-0133124_44	UniRef90	UniRef90_UPI001B3C9F75	holin	NA
UHGV-0133124_44	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0133124_44	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0133124_44	Structural annotation	PF16945	NA	NA
UHGV-0133124_45	PHROG	phrog_918	NA	unknown function
UHGV-0133124_45	UniRef90	UniRef90_UPI0019517842	NA	NA
UHGV-0133124_45	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-0133124_45	Pfam	PF19791	NA	DUF6275
UHGV-0133124_45	Structural annotation	PF19791	NA	NA
UHGV-0133124_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0133124_46	PHROG	phrog_291	endolysin	lysis
UHGV-0133124_46	UniRef90	UniRef90_A0A3D2N6C3	Glycoside hydrolase	NA
UHGV-0133124_46	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0133124_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0133124_46	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133124_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0133124_46	Structural annotation	PF01183, MF_00691, TIGR02869, NF003814, COG3757	NA	NA
UHGV-0133124_47	AcrCatalog	cluster_86620	NA	NA
UHGV-0133124_48	Structural annotation	PF09274, NF008671, COG4710	NA	NA