UHGV-0133215

Genome information

Genome length 29,695 bps

CDS count 41

Completeness 73.17% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133215
vOTU ID	vOTU-040041
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393669
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.1
Jumbo phage	No

Genome content
Genome length	29,695 bps
GC content	45.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.70%
Average CDS length	693.29 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133215_2	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0133215_2	UniRef90	UniRef90_A0A7G5MR42	Siphovirus Gp157 family protein	NA
UHGV-0133215_2	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-0133215_2	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0133215_2	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0133215_4	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0133215_5	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133215_5	UniRef90	UniRef90_UPI001E617172	ATP-binding protein	NA
UHGV-0133215_5	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0133215_5	Pfam	PF13479	AAA domain	AAA_24
UHGV-0133215_5	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0133215_6	PHROG	phrog_18107	NA	unknown function
UHGV-0133215_6	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0133215_6	Structural annotation	PF05037	NA	NA
UHGV-0133215_7	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0133215_7	PHROG	phrog_11992	NA	unknown function
UHGV-0133215_7	UniRef90	UniRef90_A0A7G5MY72	ZnF_CHCC domain-containing protein	NA
UHGV-0133215_7	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-0133215_7	PADLOC	drt-UG29	DRT	DRT
UHGV-0133215_7	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0133215_7	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0133215_7	Structural annotation	PF01807	NA	NA
UHGV-0133215_8	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0133215_8	UniRef90	UniRef90_A0A7G5MY71	NA	NA
UHGV-0133215_8	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-0133215_8	Pfam	PF06048	NA	DUF927
UHGV-0133215_8	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0133215_8	COG	COG5519	NA	NA
UHGV-0133215_8	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0133215_9	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0133215_9	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133215_9	UniRef90	UniRef90_UPI000931E6D4	Holliday junction resolvase RecU	NA
UHGV-0133215_9	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0133215_9	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0133215_9	Structural annotation	PF03838, MF_01490, NF040854, COG1591	NA	NA
UHGV-0133215_10	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0133215_10	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0133215_10	UniRef90	UniRef90_A0A7G5MY70	DEAD/DEAH box helicase	NA
UHGV-0133215_10	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0133215_10	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0133215_10	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0133215_10	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0133215_10	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0133215_10	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0133215_13	PHROG	phrog_15077	NA	unknown function
UHGV-0133215_13	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0133215_14	eggNOG-mapper	1235793.C809_02196	PcfK-like protein	NA
UHGV-0133215_14	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0133215_16	eggNOG-mapper	411468.CLOSCI_00568	NA	NA
UHGV-0133215_17	Structural annotation	PF03947, MF_01077, NF008465	NA	NA
UHGV-0133215_18	PHROG	phrog_6568	NA	unknown function
UHGV-0133215_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133215_20	UniRef90	UniRef90_A0A7G5MXJ0	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0133215_20	eggNOG-mapper	33035.JPJF01000107_gene434	Sigma-70, region 4	NA
UHGV-0133215_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0133215_20	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0133215_21	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0133215_21	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0133215_21	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0133215_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0133215_21	Structural annotation	PF16677	NA	NA
UHGV-0133215_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133215_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0133215_22	UniRef90	UniRef90_A0A7G5N2W3	Terminase	NA
UHGV-0133215_22	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0133215_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133215_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133215_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0133215_23	UniRef90	UniRef90_A0A7G5N2W0	Capsid protein	NA
UHGV-0133215_23	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0133215_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0133215_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0133215_24	UniRef90	UniRef90_A0A4R4FGP8	Capsid protein	NA
UHGV-0133215_24	eggNOG-mapper	1298920.KI911353_gene4854	Phage minor capsid protein 2	NA
UHGV-0133215_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0133215_24	COG	COG2369	NA	NA
UHGV-0133215_24	Structural annotation	PF06152	NA	NA
UHGV-0133215_25	PHROG	phrog_5106	NA	unknown function
UHGV-0133215_26	PHROG	phrog_4502	NA	unknown function
UHGV-0133215_26	UniRef90	UniRef90_A0A0A8WEQ1	Phage-related protein	NA
UHGV-0133215_26	eggNOG-mapper	1298920.KI911353_gene2655	NA	NA
UHGV-0133215_26	Structural annotation	PF14083	NA	NA
UHGV-0133215_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0133215_27	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0133215_28	PHROG	phrog_422	major head protein	head and packaging
UHGV-0133215_28	UniRef90	UniRef90_E7GRG0	Phage major capsid protein	NA
UHGV-0133215_28	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0133215_28	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133215_29	PHROG	phrog_1378	NA	unknown function
UHGV-0133215_29	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0133215_30	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0133215_30	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0133215_31	PHROG	phrog_8710	NA	unknown function
UHGV-0133215_31	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0133215_31	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0133215_32	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0133215_32	UniRef90	UniRef90_UPI001D4D3E00	minor capsid protein	NA
UHGV-0133215_32	eggNOG-mapper	1294142.CINTURNW_1033	NA	NA
UHGV-0133215_33	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0133215_33	UniRef90	UniRef90_UPI0011CC909E	minor capsid protein	NA
UHGV-0133215_33	eggNOG-mapper	1304866.K413DRAFT_0780	NA	NA
UHGV-0133215_33	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0133215_33	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0133215_34	PHROG	phrog_820	major tail protein	tail
UHGV-0133215_34	eggNOG-mapper	195103.CPF_0962	NA	NA
UHGV-0133215_34	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0133215_34	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0133215_35	PHROG	phrog_8300	NA	unknown function
UHGV-0133215_35	eggNOG-mapper	1280692.AUJL01000027_gene2153	NA	NA
UHGV-0133215_35	Structural annotation	PF06896	NA	NA
UHGV-0133215_36	PHROG	phrog_8355	NA	unknown function
UHGV-0133215_36	UniRef90	UniRef90_UPI0010239BF7	Gp15 family bacteriophage protein	NA
UHGV-0133215_36	eggNOG-mapper	1298920.KI911353_gene4842	Bacteriophage Gp15 protein	NA
UHGV-0133215_36	Structural annotation	PF06854	NA	NA
UHGV-0133215_37	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0133215_37	UniRef90	UniRef90_UPI0003F4F1A1	membrane protein	NA
UHGV-0133215_37	eggNOG-mapper	1391647.AVSV01000003_gene1817	phage tail tape measure protein	NA
UHGV-0133215_37	COG	COG1511	NA	NA
UHGV-0133215_38	PHROG	phrog_1194	NA	unknown function
UHGV-0133215_38	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0133215_38	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0133215_39	PHROG	phrog_6616	tail protein	tail
UHGV-0133215_39	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0133215_39	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0133215_39	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0133215_40	PHROG	phrog_18444	NA	unknown function
UHGV-0133215_40	eggNOG-mapper	931276.Cspa_c07570	NA	NA
UHGV-0133215_41	PHROG	phrog_24896	NA	unknown function
UHGV-0133215_41	eggNOG-mapper	1392486.JIAF01000004_gene1704	NA	NA