UHGV-0133260

Genome information

Genome length 41,098 bps

CDS count 57

Completeness 97.96% (high-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133260
vOTU ID	vOTU-009948
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_350811
BioSample	SAMN02334074
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.81
Jumbo phage	No

Genome content
Genome length	41,098 bps
GC content	58.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.84%
Average CDS length	673.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133260_2	PHROG	phrog_937	hemolysin	other
UHGV-0133260_2	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0133260_3	PHROG	phrog_37900	NA	unknown function
UHGV-0133260_3	UniRef90	UniRef90_R5IRZ6	NA	NA
UHGV-0133260_3	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0133260_3	Pfam	PF19789	NA	DUF6273
UHGV-0133260_3	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0133260_3	Structural annotation	PF19789, PF13620, NF033708	NA	NA
UHGV-0133260_4	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0133260_4	PHROG	phrog_819	tail protein	tail
UHGV-0133260_4	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0133260_4	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0133260_4	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0133260_4	Structural annotation	PF06903	NA	NA
UHGV-0133260_5	Structural annotation	PF18962, NF011773	NA	NA
UHGV-0133260_6	PHROG	phrog_22978	NA	unknown function
UHGV-0133260_6	eggNOG-mapper	1408437.JNJN01000039_gene389	heme binding	NA
UHGV-0133260_6	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0133260_6	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0133260_7	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-0133260_7	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0133260_8	PHROG	phrog_12105	NA	unknown function
UHGV-0133260_8	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0133260_10	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0133260_10	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0133260_10	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0133260_10	Pfam	PF13252	NA	DUF4043
UHGV-0133260_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0133260_10	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133260_11	PHROG	phrog_13908	NA	unknown function
UHGV-0133260_11	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0133260_12	PHROG	phrog_156	portal protein	head and packaging
UHGV-0133260_12	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0133260_12	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0133260_16	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0133260_16	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0133260_16	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0133260_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133260_17	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0133260_17	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0133260_17	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0133260_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133260_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133260_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133260_18	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0133260_18	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0133260_18	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0133260_18	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0133260_18	Structural annotation	PF16677	NA	NA
UHGV-0133260_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133260_19	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0133260_19	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0133260_20	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0133260_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0133260_20	UniRef90	UniRef90_UPI001E30CE28	site-specific DNA-methyltransferase	NA
UHGV-0133260_20	eggNOG-mapper	1125725.HMPREF1325_1312	N-4 methylation of cytosine	NA
UHGV-0133260_20	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0133260_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0133260_20	COG	COG0863	DNA modification methylase	NA
UHGV-0133260_20	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0133260_21	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0133260_21	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0133260_21	eggNOG-mapper	1567010.A0A0A7RU90_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0133260_21	Structural annotation	PF08271	NA	NA
UHGV-0133260_23	Structural annotation	PF10013	NA	NA
UHGV-0133260_25	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133260_25	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0133260_25	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0133260_25	Pfam	PF06356	NA	DUF1064
UHGV-0133260_25	Structural annotation	PF06356	NA	NA
UHGV-0133260_29	PHROG	phrog_38832	NA	unknown function
UHGV-0133260_29	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0133260_30	PHROG	phrog_3136	NA	unknown function
UHGV-0133260_30	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0133260_30	Pfam	PF04266	ASCH domain	ASCH
UHGV-0133260_30	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0133260_30	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0133260_32	Pfam	PF04448	NA	DUF551
UHGV-0133260_32	Structural annotation	NF041588	NA	NA
UHGV-0133260_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0133260_33	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0133260_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0133260_33	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0133260_37	Structural annotation	PF05082	NA	NA
UHGV-0133260_38	Structural annotation	NF041247	NA	NA
UHGV-0133260_41	Structural annotation	PF10548	NA	NA
UHGV-0133260_47	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0133260_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133260_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133260_47	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0133260_48	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0133260_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133260_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133260_50	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0133260_51	KOfam	K14059	int; integrase	NA
UHGV-0133260_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0133260_51	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0133260_51	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0133260_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0133260_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133260_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133260_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0133260_52	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0133260_52	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0133260_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0133260_54	PHROG	phrog_16490	NA	unknown function
UHGV-0133260_56	UniRef90	UniRef90_UPI00189B2CE2	SH3 domain-containing protein	NA
UHGV-0133260_56	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0133260_56	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0133260_56	Structural annotation	NF033743	NA	NA