UHGV-0133337

Genome information

Genome length 37,340 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133337
vOTU ID	vOTU-045958
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_388103
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.17
Jumbo phage	No

Genome content
Genome length	37,340 bps
GC content	59.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	87.25%
Average CDS length	667.41 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133337_1	PHROG	phrog_15863	NA	unknown function
UHGV-0133337_1	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-0133337_1	eggNOG-mapper	471855.Shel_20200	Heat shock protein DnaJ domain protein	NA
UHGV-0133337_1	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0133337_2	PHROG	phrog_13890	NA	unknown function
UHGV-0133337_2	UniRef90	UniRef90_G9YP46	Arc-like DNA-binding protein	NA
UHGV-0133337_2	Pfam	PF08681	NA	DUF1778
UHGV-0133337_3	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0133337_3	UniRef90	UniRef90_A0A4D7AM67	DNA-packaging protein	NA
UHGV-0133337_3	eggNOG-mapper	693746.OBV_01750	NA	NA
UHGV-0133337_3	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0133337_5	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-0133337_5	Structural annotation	PF11650	NA	NA
UHGV-0133337_7	PHROG	phrog_422	major head protein	head and packaging
UHGV-0133337_7	UniRef90	UniRef90_K1TJJ5	Gp7 (Fragment)	NA
UHGV-0133337_7	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-0133337_7	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0133337_7	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133337_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133337_8	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0133337_8	UniRef90	UniRef90_A0A4D7AXL6	Phage terminase large subunit	NA
UHGV-0133337_8	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0133337_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133337_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133337_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133337_9	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-0133337_9	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-0133337_9	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-0133337_10	PHROG	phrog_156	portal protein	head and packaging
UHGV-0133337_10	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-0133337_10	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0133337_11	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0133337_12	PHROG	phrog_5302	tail protein	tail
UHGV-0133337_12	UniRef90	UniRef90_UPI001EDFA717	bacterial Ig-like domain-containing protein	NA
UHGV-0133337_12	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0133337_12	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0133337_12	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0133337_12	Structural annotation	PF07210, TIGR03000, TIGR03525, COG1262	NA	NA
UHGV-0133337_14	PHROG	phrog_4105	NA	unknown function
UHGV-0133337_15	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0133337_15	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0133337_16	PHROG	phrog_13256	NA	unknown function
UHGV-0133337_16	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0133337_17	PHROG	phrog_21357	endolysin	lysis
UHGV-0133337_17	UniRef90	UniRef90_G9YP37	SLH domain-containing protein	NA
UHGV-0133337_17	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0133337_17	COG	COG1388	LysM repeat	NA
UHGV-0133337_17	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0133337_18	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-0133337_19	UniRef90	UniRef90_A0A810QFN4	LPD3 domain-containing protein	NA
UHGV-0133337_19	eggNOG-mapper	693746.OBV_01590	NA	NA
UHGV-0133337_19	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0133337_23	UniRef90	UniRef90_UPI001C037734	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0133337_23	Structural annotation	PF04545, MF_00245, NF001067, COG2771	NA	NA
UHGV-0133337_24	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0133337_24	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0133337_24	eggNOG-mapper	1122917.KB899661_gene912	Putative sugar diacid recognition	NA
UHGV-0133337_24	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0133337_24	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0133337_24	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0133337_26	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0133337_26	Structural annotation	PF18073	NA	NA
UHGV-0133337_27	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0133337_28	PHROG	phrog_38832	NA	unknown function
UHGV-0133337_28	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0133337_28	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0133337_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133337_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0133337_31	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133337_31	UniRef90	UniRef90_R6ZAS0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0133337_31	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0133337_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0133337_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0133337_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0133337_32	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0133337_33	UniRef90	UniRef90_UPI001C100C37	single-stranded DNA-binding protein	NA
UHGV-0133337_33	Structural annotation	PF00436, MF_00984, NF006297, COG0629	NA	NA
UHGV-0133337_34	PHROG	phrog_10048	NA	unknown function
UHGV-0133337_34	eggNOG-mapper	1111134.HMPREF1253_1200	NA	NA
UHGV-0133337_34	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0133337_35	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133337_35	UniRef90	UniRef90_A0A2K9V3J9	Exonuclease	NA
UHGV-0133337_35	COG	COG2887	RecB family exonuclease	NA
UHGV-0133337_35	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0133337_37	PHROG	phrog_22529	NA	unknown function
UHGV-0133337_37	UniRef90	UniRef90_A0A352RPR8	3D domain-containing protein	NA
UHGV-0133337_37	eggNOG-mapper	411461.DORFOR_01578	3D domain	NA
UHGV-0133337_37	Pfam	PF06725	3D domain	3D
UHGV-0133337_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0133337_37	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0133337_39	Structural annotation	PF12728	NA	NA
UHGV-0133337_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0133337_40	UniRef90	UniRef90_A0A433R816	Bro-N domain-containing protein	NA
UHGV-0133337_40	eggNOG-mapper	1347392.CCEZ01000015_gene2859	Phage antirepressor protein	NA
UHGV-0133337_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133337_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0133337_40	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0133337_43	UniRef90	UniRef90_UPI001D0E690A	helix-turn-helix domain-containing protein	NA
UHGV-0133337_43	eggNOG-mapper	796940.HMPREF9628_01560	NA	NA
UHGV-0133337_43	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0133337_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133337_44	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0133337_44	UniRef90	UniRef90_K1TCM8	Protein containing Helix-turn-helix type 3 domain protein	NA
UHGV-0133337_44	eggNOG-mapper	1378168.N510_01124	Transcriptional	NA
UHGV-0133337_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133337_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133337_44	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0133337_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0133337_46	KOfam	K14059	int; integrase	NA
UHGV-0133337_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0133337_46	UniRef90	UniRef90_A0A4D7AYG4	Site-specific integrase	NA
UHGV-0133337_46	eggNOG-mapper	1519439.JPJG01000011_gene49	Phage integrase family	NA
UHGV-0133337_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133337_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133337_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0133337_47	Structural annotation	PF17917	NA	NA
UHGV-0133337_49	Structural annotation	PF18336	NA	NA