UHGV-0133349

Genome information

Genome length 43,370 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133349
vOTU ID	vOTU-007068
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_388065
BioSample	SAMN04261291
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.3
Jumbo phage	No

Genome content
Genome length	43,370 bps
GC content	60.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	93.72%
Average CDS length	785.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133349_4	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133349_4	eggNOG-mapper	1285586.H131_14983	NA	NA
UHGV-0133349_4	Structural annotation	PF21578	NA	NA
UHGV-0133349_5	eggNOG-mapper	1235799.C818_02650	NA	NA
UHGV-0133349_6	Structural annotation	NF041588	NA	NA
UHGV-0133349_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0133349_8	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0133349_8	UniRef90	UniRef90_A0A174TW17	Probable chromosome-partitioning protein parB	NA
UHGV-0133349_8	eggNOG-mapper	445972.ANACOL_00162	ParB-like nuclease domain	NA
UHGV-0133349_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0133349_8	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0133349_8	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0133349_8	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0133349_11	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133349_11	UniRef90	UniRef90_A0A5C5E7Y8	HNH endonuclease	NA
UHGV-0133349_11	eggNOG-mapper	478749.BRYFOR_06584	AP2 domain protein	NA
UHGV-0133349_14	PHROG	phrog_1206	terminase small subunit	head and packaging
UHGV-0133349_14	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0133349_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133349_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0133349_15	UniRef90	UniRef90_A0A2V2GR60	Terminase-like family protein	NA
UHGV-0133349_15	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0133349_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0133349_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133349_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133349_16	PHROG	phrog_156	portal protein	head and packaging
UHGV-0133349_16	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0133349_16	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0133349_17	KOfam	K07584	NA	NA
UHGV-0133349_17	PHROG	phrog_4478	peptidase	other
UHGV-0133349_17	UniRef90	UniRef90_A0A847HK07	Ribosomal-processing cysteine protease Prp	NA
UHGV-0133349_17	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0133349_17	COG	COG2868	NA	NA
UHGV-0133349_17	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0133349_18	PHROG	phrog_13908	NA	unknown function
UHGV-0133349_19	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0133349_19	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0133349_19	eggNOG-mapper	748224.HMPREF9436_01399	NA	NA
UHGV-0133349_19	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0133349_19	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133349_21	PHROG	phrog_12105	NA	unknown function
UHGV-0133349_21	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0133349_22	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0133349_22	UniRef90	UniRef90_A0A8D9UH72	Stabilization protein (Fragment)	NA
UHGV-0133349_22	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0133349_22	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-0133349_24	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0133349_25	PHROG	phrog_22978	NA	unknown function
UHGV-0133349_25	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0133349_25	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0133349_26	KOfam	K06823	COL18A; collagen type XVIII alpha	NA
UHGV-0133349_26	PHROG	phrog_32779	NA	unknown function
UHGV-0133349_26	eggNOG-mapper	1235803.C825_05332	Collagen triple helix repeat (20 copies)	NA
UHGV-0133349_26	Pfam	PF19079	Collagen-flanked surface repeat	CFSR
UHGV-0133349_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0133349_26	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0133349_29	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0133349_29	PHROG	phrog_2649	endolysin	lysis
UHGV-0133349_29	UniRef90	UniRef90_A0A7C6BPE1	NlpC/P60 domain-containing protein	NA
UHGV-0133349_29	eggNOG-mapper	483219.LILAB_06005	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0133349_29	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0133349_29	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133349_29	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0133349_29	Structural annotation	PF00877, PF01471, NF033742, NF038080, COG0791	NA	NA
UHGV-0133349_30	PHROG	phrog_4257	NA	unknown function
UHGV-0133349_31	PHROG	phrog_1048	NA	unknown function
UHGV-0133349_31	UniRef90	UniRef90_A0A3R6M839	NA	NA
UHGV-0133349_31	eggNOG-mapper	411473.RUMCAL_01927	NA	NA
UHGV-0133349_31	Pfam	PF11195	NA	DUF2829
UHGV-0133349_31	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0133349_31	Structural annotation	PF11195	NA	NA
UHGV-0133349_32	PHROG	phrog_962	holin	lysis
UHGV-0133349_32	UniRef90	UniRef90_A0A1W2A7S4	Holin, phage phi LC3 family	NA
UHGV-0133349_32	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-0133349_32	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0133349_32	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0133349_32	COG	COG5546	NA	NA
UHGV-0133349_32	Structural annotation	COG5546	NA	NA
UHGV-0133349_33	Structural annotation	PF08281, MF_00245, NF001070, COG2739	NA	NA
UHGV-0133349_36	PHROG	phrog_16490	NA	unknown function
UHGV-0133349_36	UniRef90	UniRef90_A0A7M1S0F9	Spike protein/glycoprotein	NA
UHGV-0133349_36	eggNOG-mapper	1226322.HMPREF1545_00076	NA	NA
UHGV-0133349_37	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0133349_38	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0133349_39	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0133349_39	PHROG	phrog_95	integrase	integration and excision
UHGV-0133349_39	UniRef90	UniRef90_A0A6N7WM42	Recombinase family protein	NA
UHGV-0133349_39	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-0133349_39	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0133349_39	Pfam	PF07508	Recombinase	Recombinase
UHGV-0133349_39	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0133349_39	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0133349_39	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0133349_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0133349_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133349_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133349_44	UniRef90	UniRef90_R5QWT0	Transcriptional regulator	NA
UHGV-0133349_44	eggNOG-mapper	742725.HMPREF9450_00102	Helix-turn-helix domain	NA
UHGV-0133349_44	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0133349_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133349_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA