UHGV-0133361

Genome information

Genome length 50,566 bps

CDS count 57

Completeness 68.13% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133361
vOTU ID	vOTU-037783
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_386721
BioSample	SAMN04261265
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.05
Jumbo phage	No

Genome content
Genome length	50,566 bps
GC content	43.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	85.71%
Average CDS length	762.37 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133361_4	PHROG	phrog_16490	NA	unknown function
UHGV-0133361_4	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0133361_4	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0133361_5	PHROG	phrog_31654	NA	unknown function
UHGV-0133361_5	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0133361_6	PHROG	phrog_28898	NA	unknown function
UHGV-0133361_6	eggNOG-mapper	411901.BACCAC_01110	NA	NA
UHGV-0133361_6	Structural annotation	PF10781	NA	NA
UHGV-0133361_8	PHROG	phrog_38431	NA	unknown function
UHGV-0133361_8	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0133361_8	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0133361_10	PHROG	phrog_14770	NA	unknown function
UHGV-0133361_10	UniRef90	UniRef90_A0A415VE78	Helicase ATP-binding domain-containing protein	NA
UHGV-0133361_10	eggNOG-mapper	1121098.HMPREF1534_01128	CRISPR-associated helicase, Cas3	NA
UHGV-0133361_10	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0133361_10	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0133361_10	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0133361_10	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0133361_10	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0133361_13	eggNOG-mapper	1121098.HMPREF1534_01130	NA	NA
UHGV-0133361_15	UniRef90	UniRef90_A0A412HHM5	XRE family transcriptional regulator	NA
UHGV-0133361_15	eggNOG-mapper	997884.HMPREF1068_03266	NA	NA
UHGV-0133361_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133361_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133361_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0133361_23	Structural annotation	PF08863, NF011240	NA	NA
UHGV-0133361_24	Structural annotation	PF18300	NA	NA
UHGV-0133361_27	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0133361_29	Structural annotation	PF12286	NA	NA
UHGV-0133361_31	PHROG	phrog_98	NA	unknown function
UHGV-0133361_31	UniRef90	UniRef90_K1SIW5	YopX domain-containing protein	NA
UHGV-0133361_31	eggNOG-mapper	1450694.BTS2_0501	YopX protein	NA
UHGV-0133361_31	Pfam	PF09643	YopX protein	YopX
UHGV-0133361_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0133361_34	Structural annotation	PF10623	NA	NA
UHGV-0133361_36	PHROG	phrog_625	NA	unknown function
UHGV-0133361_36	UniRef90	UniRef90_A0A3E5E2G2	ASCH domain-containing protein	NA
UHGV-0133361_36	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0133361_36	Structural annotation	PF12961	NA	NA
UHGV-0133361_37	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0133361_39	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0133361_39	PHROG	phrog_200	lipoprotein	other
UHGV-0133361_39	UniRef90	UniRef90_A0A3R6JV58	Prohibitin family protein	NA
UHGV-0133361_39	eggNOG-mapper	1122621.ATZA01000001_gene1899	stress-induced mitochondrial fusion	NA
UHGV-0133361_39	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0133361_39	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0133361_39	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0133361_40	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0133361_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0133361_40	UniRef90	UniRef90_UPI001C389085	site-specific integrase	NA
UHGV-0133361_40	eggNOG-mapper	742727.HMPREF9447_04802	Arm DNA-binding domain	NA
UHGV-0133361_40	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0133361_40	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0133361_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133361_40	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0133361_40	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0133361_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133361_41	UniRef90	UniRef90_A0A3R5ZKQ5	XRE family transcriptional regulator	NA
UHGV-0133361_41	eggNOG-mapper	886379.AEWI01000013_gene2144	Helix-turn-helix XRE-family like proteins	NA
UHGV-0133361_41	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0133361_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0133361_42	Structural annotation	PF08587	NA	NA
UHGV-0133361_43	PHROG	phrog_5034	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133361_43	UniRef90	UniRef90_A0A414YGC0	Recombinase	NA
UHGV-0133361_43	eggNOG-mapper	435591.BDI_0857	Bacteriophage Lambda NinG protein	NA
UHGV-0133361_43	Pfam	PF05766	Bacteriophage Lambda NinG protein	NinG
UHGV-0133361_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133361_43	Structural annotation	PF05766	NA	NA
UHGV-0133361_44	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0133361_44	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0133361_44	UniRef90	UniRef90_A0A3E5E957	dUTPase domain-containing protein	NA
UHGV-0133361_44	eggNOG-mapper	1122128.AUEE01000007_gene1660	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0133361_44	Pfam	PF00692	dUTPase	dUTPase
UHGV-0133361_44	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0133361_44	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0133361_46	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133361_46	UniRef90	UniRef90_UPI001F3D95EE	NUMOD4 domain-containing protein	NA
UHGV-0133361_46	eggNOG-mapper	1229751.R9QM99_9CAUD	HNH endonuclease	NA
UHGV-0133361_46	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0133361_46	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0133361_46	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0133361_46	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0133361_46	Structural annotation	PF04936	NA	NA
UHGV-0133361_47	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0133361_47	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133361_47	UniRef90	UniRef90_A0A646FTS8	AAA family ATPase	NA
UHGV-0133361_47	eggNOG-mapper	1392486.JIAF01000004_gene2636	AAA domain	NA
UHGV-0133361_47	PADLOC	AAA_15	NA	NA
UHGV-0133361_47	Pfam	PF13476	AAA domain	AAA_23
UHGV-0133361_47	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0133361_47	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0133361_48	Structural annotation	PF18300, COG5475	NA	NA
UHGV-0133361_50	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0133361_50	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133361_50	UniRef90	UniRef90_A0A3R6HTW1	Recombinase	NA
UHGV-0133361_50	eggNOG-mapper	445970.ALIPUT_02693	Recombinase, phage RecT family	NA
UHGV-0133361_50	Pfam	PF03837	RecT family	RecT
UHGV-0133361_50	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0133361_50	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0133361_50	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0133361_51	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0133361_51	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0133361_52	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0133361_52	UniRef90	UniRef90_A0A3R6J4F2	MBL fold metallo-hydrolase	NA
UHGV-0133361_52	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-0133361_52	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0133361_52	Structural annotation	PF12706, MF_00457, NF041851, COG2220	NA	NA
UHGV-0133361_53	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0133361_54	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133361_54	UniRef90	UniRef90_A0A840TPV7	NA	NA
UHGV-0133361_55	Structural annotation	PF20338	NA	NA