UHGV-0133423

Genome information

Genome length 23,283 bps

CDS count 54

Completeness 56.25% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133423
vOTU ID	vOTU-033931
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_352576
BioSample	SAMN02334089
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.5
Jumbo phage	No

Genome content
Genome length	23,283 bps
GC content	51.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.69%
Average CDS length	396.39 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133423_4	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0133423_5	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0133423_5	PHROG	phrog_894	endolysin	lysis
UHGV-0133423_5	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0133423_5	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0133423_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133423_5	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0133423_5	COG	COG3108	NA	NA
UHGV-0133423_5	Structural annotation	PF05951, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0133423_6	PHROG	phrog_937	hemolysin	other
UHGV-0133423_6	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0133423_7	PHROG	phrog_10091	holin	lysis
UHGV-0133423_7	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0133423_7	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0133423_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0133423_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0133423_7	COG	COG5546	NA	NA
UHGV-0133423_7	Structural annotation	COG5546	NA	NA
UHGV-0133423_8	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0133423_9	PHROG	phrog_3754	NA	unknown function
UHGV-0133423_9	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0133423_10	PHROG	phrog_21718	NA	unknown function
UHGV-0133423_10	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0133423_11	PHROG	phrog_22984	NA	unknown function
UHGV-0133423_12	PHROG	phrog_16490	NA	unknown function
UHGV-0133423_12	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0133423_13	PHROG	phrog_20016	NA	unknown function
UHGV-0133423_13	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0133423_13	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0133423_13	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0133423_14	Structural annotation	PF12510	NA	NA
UHGV-0133423_16	KOfam	K14059	int; integrase	NA
UHGV-0133423_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0133423_16	UniRef90	UniRef90_A0A3D2HVQ9	Tyr recombinase domain-containing protein	NA
UHGV-0133423_16	eggNOG-mapper	585501.HMPREF6123_0870	Phage integrase family	NA
UHGV-0133423_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133423_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133423_16	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0133423_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133423_17	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0133423_18	UniRef90	UniRef90_UPI0004885B34	SAP domain-containing protein	NA
UHGV-0133423_18	eggNOG-mapper	1408323.JQKK01000005_gene152	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0133423_18	Pfam	PF02037	SAP domain	SAP
UHGV-0133423_21	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-0133423_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133423_22	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0133423_22	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0133423_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133423_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133423_22	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0133423_23	UniRef90	UniRef90_A0A8D9PDN2	DNA-binding protein	NA
UHGV-0133423_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133423_23	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0133423_25	Structural annotation	PF20432, NF041951, COG3655	NA	NA
UHGV-0133423_26	UniRef90	UniRef90_A0A396PRZ5	NA	NA
UHGV-0133423_26	Pfam	PF20037	NA	DUF6440
UHGV-0133423_27	Structural annotation	PF08962, PF07653, COG2388	NA	NA
UHGV-0133423_30	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0133423_30	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0133423_30	eggNOG-mapper	552398.HMPREF0866_01626	NA	NA
UHGV-0133423_31	PHROG	phrog_1029	NA	unknown function
UHGV-0133423_31	eggNOG-mapper	552398.HMPREF0866_01625	NA	NA
UHGV-0133423_31	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0133423_34	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133423_34	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0133423_34	eggNOG-mapper	511437.Lbuc_1541	NA	NA
UHGV-0133423_34	Structural annotation	PF17375	NA	NA
UHGV-0133423_35	PHROG	phrog_14970	NA	unknown function
UHGV-0133423_35	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0133423_35	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0133423_35	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0133423_35	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0133423_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0133423_36	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0133423_36	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0133423_36	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0133423_36	Structural annotation	PF05772	NA	NA
UHGV-0133423_37	UniRef90	UniRef90_UPI001D05CADB	HNH endonuclease	NA
UHGV-0133423_37	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0133423_37	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0133423_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0133423_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133423_38	UniRef90	UniRef90_A0A8J6J1Z1	Single-stranded DNA-binding protein	NA
UHGV-0133423_38	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0133423_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0133423_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0133423_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0133423_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0133423_38	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0133423_39	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0133423_39	eggNOG-mapper	1235797.C816_01664	COG NOG12663 non supervised orthologous group	NA
UHGV-0133423_39	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0133423_40	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0133423_40	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133423_40	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0133423_40	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0133423_40	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0133423_41	PHROG	phrog_4973	NA	unknown function
UHGV-0133423_41	UniRef90	UniRef90_A0A3D3Y0P8	DNA-binding protein	NA
UHGV-0133423_41	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0133423_41	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0133423_41	Structural annotation	PF14090, TIGR00373, COG4738	NA	NA
UHGV-0133423_43	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0133423_43	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0133423_43	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0133423_43	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0133423_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133423_43	Structural annotation	PF14297	NA	NA
UHGV-0133423_46	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0133423_46	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0133423_46	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0133423_46	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133423_46	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0133423_47	eggNOG-mapper	1437882.AZRU01000211_gene2728	NA	NA
UHGV-0133423_48	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0133423_48	UniRef90	UniRef90_UPI001C011216	Lar family restriction alleviation protein	NA
UHGV-0133423_48	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0133423_48	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0133423_48	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0133423_48	Structural annotation	PF14354	NA	NA
UHGV-0133423_51	PHROG	phrog_924	NA	unknown function
UHGV-0133423_51	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0133423_51	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0133423_51	Pfam	PF04448	NA	DUF551
UHGV-0133423_51	Structural annotation	PF04448, NF041588	NA	NA