UHGV-0133462

Genome information

vOTU vOTU-020154

Genome length 27,847 bps

CDS count 39

Completeness 59.12% (medium-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133462
vOTU ID	vOTU-020154
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375497
BioSample	SAMN03418256
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.98
Jumbo phage	No

Genome content
Genome length	27,847 bps
GC content	46.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.93%
Average CDS length	652.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133462_1	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0133462_1	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0133462_1	UniRef90	UniRef90_UPI000F0C09AB	phage terminase large subunit family protein	NA
UHGV-0133462_1	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0133462_1	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0133462_1	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0133462_1	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0133462_1	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0133462_2	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0133462_2	UniRef90	UniRef90_UPI000D1063A5	NA	NA
UHGV-0133462_2	eggNOG-mapper	1262914.BN533_00292	NA	NA
UHGV-0133462_2	Pfam	PF19645	NA	DUF6148
UHGV-0133462_2	Structural annotation	PF19645	NA	NA
UHGV-0133462_3	PHROG	phrog_21	portal protein	head and packaging
UHGV-0133462_3	UniRef90	UniRef90_A0A1M6SL22	Phage portal protein, lambda family	NA
UHGV-0133462_3	eggNOG-mapper	1262914.BN533_00784	Phage portal protein	NA
UHGV-0133462_3	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0133462_3	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0133462_3	COG	COG5511	Phage capsid protein	NA
UHGV-0133462_3	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0133462_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0133462_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0133462_4	UniRef90	UniRef90_UPI000F0C7B06	Clp protease ClpP	NA
UHGV-0133462_4	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0133462_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0133462_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0133462_4	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0133462_5	PHROG	phrog_49	head decoration	head and packaging
UHGV-0133462_5	UniRef90	UniRef90_UPI000F0CF163	head decoration protein	NA
UHGV-0133462_5	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-0133462_5	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0133462_5	Structural annotation	PF02924	NA	NA
UHGV-0133462_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-0133462_6	UniRef90	UniRef90_UPI000F0CF09A	major capsid protein	NA
UHGV-0133462_6	eggNOG-mapper	1273103.NM10_03136	Phage major capsid protein E	NA
UHGV-0133462_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0133462_6	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0133462_7	Structural annotation	PF10208	NA	NA
UHGV-0133462_8	PHROG	phrog_2551	minor tail protein	tail
UHGV-0133462_8	UniRef90	UniRef90_R6I9C8	Sugar ABC transporter ATP-binding protein	NA
UHGV-0133462_8	eggNOG-mapper	1262914.BN533_01003	Product inferred by homology to UniProt	NA
UHGV-0133462_8	Structural annotation	PF13856	NA	NA
UHGV-0133462_9	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0133462_9	UniRef90	UniRef90_UPI001C063072	phage tail protein	NA
UHGV-0133462_9	eggNOG-mapper	1262914.BN533_00997	Prophage minor tail protein Z (GPZ)	NA
UHGV-0133462_9	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0133462_9	Structural annotation	PF06763	NA	NA
UHGV-0133462_10	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0133462_10	eggNOG-mapper	1262914.BN533_00996	NA	NA
UHGV-0133462_10	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0133462_11	PHROG	phrog_4089	NA	unknown function
UHGV-0133462_11	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0133462_12	KOfam	K06907	NA	NA
UHGV-0133462_12	PHROG	phrog_23	tail sheath	tail
UHGV-0133462_12	UniRef90	UniRef90_A0A2A2IKV4	Phage tail protein	NA
UHGV-0133462_12	eggNOG-mapper	936573.HMPREF1147_1726	COG3497 Phage tail sheath protein FI	NA
UHGV-0133462_12	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0133462_12	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0133462_13	KOfam	K06908	NA	NA
UHGV-0133462_13	PHROG	phrog_55	head closure	connector
UHGV-0133462_13	UniRef90	UniRef90_R6J7N4	Phage major tail tube protein	NA
UHGV-0133462_13	eggNOG-mapper	1262914.BN533_01373	tail tube protein	NA
UHGV-0133462_13	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0133462_13	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0133462_13	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0133462_14	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0133462_14	UniRef90	UniRef90_R6ILQ4	Mu-like prophage FluMu protein gp41	NA
UHGV-0133462_14	eggNOG-mapper	1262914.BN533_01372	NA	NA
UHGV-0133462_14	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0133462_14	Structural annotation	PF10109	NA	NA
UHGV-0133462_16	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0133462_16	UniRef90	UniRef90_A0A2A2IKN4	Phage tail tape measure protein	NA
UHGV-0133462_16	eggNOG-mapper	936573.HMPREF1147_1730	Phage-related minor tail protein	NA
UHGV-0133462_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0133462_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0133462_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0133462_16	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0133462_17	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0133462_17	UniRef90	UniRef90_UPI000E54237F	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0133462_17	eggNOG-mapper	999413.HMPREF1094_00480	IrrE N-terminal-like domain	NA
UHGV-0133462_17	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0133462_17	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0133462_17	Structural annotation	PF06114, NF038139, COG2856	NA	NA
UHGV-0133462_18	eggNOG-mapper	1121333.JMLH01000023_gene2074	NA	NA
UHGV-0133462_19	UniRef90	UniRef90_A0A6G3M2L8	CopG family transcriptional regulator	NA
UHGV-0133462_19	eggNOG-mapper	1122918.KB907267_gene2	NA	NA
UHGV-0133462_19	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0133462_20	PHROG	phrog_7940	NA	unknown function
UHGV-0133462_20	UniRef90	UniRef90_A0A316S9G6	Toxin Bro	NA
UHGV-0133462_20	eggNOG-mapper	936573.HMPREF1147_1319	BRO family, N-terminal domain	NA
UHGV-0133462_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133462_20	COG	COG3617	Prophage antirepressor	NA
UHGV-0133462_20	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0133462_22	KOfam	K06905	NA	NA
UHGV-0133462_22	PHROG	phrog_52	tail protein	tail
UHGV-0133462_22	UniRef90	UniRef90_UPI001CD5459F	transcriptional regulator	NA
UHGV-0133462_22	eggNOG-mapper	1280706.AUJE01000010_gene671	COG3500 Phage protein D	NA
UHGV-0133462_22	COG	COG3500	NA	NA
UHGV-0133462_22	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0133462_23	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0133462_23	UniRef90	UniRef90_A0A6N7VMZ2	Phage baseplate assembly protein V	NA
UHGV-0133462_23	eggNOG-mapper	1262914.BN533_01719	Phage baseplate assembly protein V	NA
UHGV-0133462_23	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0133462_23	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0133462_23	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0133462_24	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0133462_24	UniRef90	UniRef90_A0A1Q6RAC4	PaaR repeat-containing protein	NA
UHGV-0133462_24	eggNOG-mapper	1280706.AUJE01000010_gene673	PAAR repeat-containing protein	NA
UHGV-0133462_24	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0133462_24	COG	COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	NA
UHGV-0133462_24	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0133462_25	KOfam	K06906	NA	NA
UHGV-0133462_25	PHROG	phrog_76	tail protein	tail
UHGV-0133462_25	UniRef90	UniRef90_A0A6N7W1P7	Phage tail protein	NA
UHGV-0133462_25	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0133462_25	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0133462_25	COG	COG3499	NA	NA
UHGV-0133462_25	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0133462_26	KOfam	K06903	NA	NA
UHGV-0133462_26	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0133462_26	UniRef90	UniRef90_A0A6N7W1K0	GPW/gp25 family protein	NA
UHGV-0133462_26	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-0133462_26	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0133462_26	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0133462_26	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0133462_27	PHROG	phrog_6	baseplate protein	tail
UHGV-0133462_27	UniRef90	UniRef90_A0A2A2IKV6	Baseplate protein	NA
UHGV-0133462_27	eggNOG-mapper	1280706.AUJE01000010_gene676	Baseplate J-like protein	NA
UHGV-0133462_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0133462_27	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0133462_27	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0133462_28	PHROG	phrog_14404	baseplate protein	tail
UHGV-0133462_28	UniRef90	UniRef90_A0A2A2IJZ7	Phage tail protein I	NA
UHGV-0133462_28	eggNOG-mapper	1262914.BN533_01711	Phage tail protein (Tail_P2_I)	NA
UHGV-0133462_28	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0133462_28	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0133462_28	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0133462_28	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0133462_29	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0133462_29	UniRef90	UniRef90_UPI00195EB260	phage tail protein	NA
UHGV-0133462_29	eggNOG-mapper	484770.UFO1_1716	Phage tail-collar fibre protein	NA
UHGV-0133462_29	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0133462_29	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0133462_29	Structural annotation	PF12571	NA	NA
UHGV-0133462_30	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0133462_30	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0133462_32	PHROG	phrog_38707	NA	unknown function
UHGV-0133462_32	UniRef90	UniRef90_A0A5C7JNJ4	Mtd_N domain-containing protein	NA
UHGV-0133462_32	eggNOG-mapper	478749.BRYFOR_07557	tail collar domain protein	NA
UHGV-0133462_32	COG	COG4675	Phage tail collar domain	NA
UHGV-0133462_32	Structural annotation	PF18454	NA	NA
UHGV-0133462_33	eggNOG-mapper	909297.G8CLB0_9CAUD	NA	NA
UHGV-0133462_33	Structural annotation	PF18454	NA	NA
UHGV-0133462_34	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0133462_34	eggNOG-mapper	864563.HMPREF9166_0550	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0133462_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0133462_35	PHROG	phrog_1141	tail fiber protein	tail
UHGV-0133462_35	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0133462_35	Pfam	PF14301	NA	DUF4376
UHGV-0133462_35	Structural annotation	PF14301	NA	NA
UHGV-0133462_36	KOfam	K14059	int; integrase	NA
UHGV-0133462_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0133462_36	UniRef90	UniRef90_UPI000F0C2855	tyrosine-type recombinase/integrase	NA
UHGV-0133462_36	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0133462_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133462_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133462_36	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0133462_37	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0133462_37	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0133462_37	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0133462_37	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0133462_38	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133462_38	PHROG	phrog_435	endolysin	lysis
UHGV-0133462_38	UniRef90	UniRef90_UPI000F0CFF53	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133462_38	eggNOG-mapper	568816.Acin_1891	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133462_38	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0133462_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133462_38	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA