UHGV-0133464

Genome information

Genome length 26,432 bps

CDS count 38

Completeness 73.47% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133464
vOTU ID	vOTU-030225
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375495
BioSample	SAMN03418256
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.58
Jumbo phage	No

Genome content
Genome length	26,432 bps
GC content	42.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	96.36%
Average CDS length	672.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133464_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133464_3	PHROG	phrog_7698	endolysin	lysis
UHGV-0133464_3	UniRef90	UniRef90_R6DZ86	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0133464_3	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133464_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0133464_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133464_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133464_3	Structural annotation	PF01510, MF_04111, NF008758, NF038080, COG5632	NA	NA
UHGV-0133464_4	PHROG	phrog_263	holin	lysis
UHGV-0133464_4	UniRef90	UniRef90_R6E0V9	Holin SPP1 family	NA
UHGV-0133464_4	eggNOG-mapper	445971.ANASTE_00091	SPP1 phage holin	NA
UHGV-0133464_4	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0133464_4	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0133464_5	PHROG	phrog_1863	NA	unknown function
UHGV-0133464_5	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0133464_10	PHROG	phrog_1401	NA	unknown function
UHGV-0133464_10	UniRef90	UniRef90_UPI00058BC27B	NA	NA
UHGV-0133464_10	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0133464_10	Structural annotation	PF07761	NA	NA
UHGV-0133464_11	PHROG	phrog_1330	tail protein	tail
UHGV-0133464_11	UniRef90	UniRef90_R5YH87	CBM-cenC domain-containing protein	NA
UHGV-0133464_11	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0133464_11	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0133464_12	PHROG	phrog_1194	NA	unknown function
UHGV-0133464_13	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0133464_13	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0133464_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0133464_14	PHROG	phrog_706	NA	unknown function
UHGV-0133464_14	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0133464_14	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0133464_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0133464_14	Structural annotation	PF06854	NA	NA
UHGV-0133464_15	Structural annotation	PF10666	NA	NA
UHGV-0133464_16	PHROG	phrog_3099	NA	unknown function
UHGV-0133464_16	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0133464_16	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0133464_17	PHROG	phrog_3266	tail completion	connector
UHGV-0133464_17	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0133464_17	eggNOG-mapper	411490.ANACAC_00773	NA	NA
UHGV-0133464_17	Structural annotation	PF12691	NA	NA
UHGV-0133464_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0133464_18	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-0133464_18	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0133464_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0133464_18	Structural annotation	PF11114	NA	NA
UHGV-0133464_19	PHROG	phrog_3366	NA	unknown function
UHGV-0133464_19	Pfam	PF20536	NA	DUF6751
UHGV-0133464_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0133464_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0133464_20	UniRef90	UniRef90_R6DKE0	Putative gp8	NA
UHGV-0133464_20	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0133464_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0133464_21	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0133464_21	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0133464_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0133464_22	UniRef90	UniRef90_R6DN20	Phage minor structural protein GP20	NA
UHGV-0133464_22	eggNOG-mapper	536233.CLO_0539	Phage minor structural protein GP20	NA
UHGV-0133464_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0133464_22	Structural annotation	PF06810	NA	NA
UHGV-0133464_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0133464_23	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0133464_23	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0133464_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0133464_23	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0133464_23	COG	COG2369	NA	NA
UHGV-0133464_23	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0133464_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0133464_24	UniRef90	UniRef90_R6DKE2	Phage minor capsid protein	NA
UHGV-0133464_24	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0133464_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133464_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0133464_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133464_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0133464_25	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0133464_25	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0133464_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133464_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133464_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133464_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133464_26	PHROG	phrog_2412	NA	unknown function
UHGV-0133464_26	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0133464_26	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0133464_27	eggNOG-mapper	679200.HMPREF9333_02268	Phage integrase family	NA
UHGV-0133464_27	COG	COG2369	NA	NA
UHGV-0133464_29	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0133464_29	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0133464_29	UniRef90	UniRef90_R6DKE7	ParB domain-containing protein	NA
UHGV-0133464_29	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0133464_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0133464_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0133464_29	Pfam	PF14386	NA	DUF4417
UHGV-0133464_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0133464_29	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0133464_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133464_30	UniRef90	UniRef90_A0A374MZ02	NA	NA
UHGV-0133464_30	eggNOG-mapper	1410624.JNKK01000051_gene2469	sigma factor activity	NA
UHGV-0133464_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0133464_30	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0133464_31	Structural annotation	PF09871, COG4014	NA	NA
UHGV-0133464_32	PHROG	phrog_8684	NA	unknown function
UHGV-0133464_32	UniRef90	UniRef90_A0A3D4KYC5	YopX domain-containing protein	NA
UHGV-0133464_32	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0133464_32	Pfam	PF09643	YopX protein	YopX
UHGV-0133464_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0133464_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0133464_34	PHROG	phrog_10714	NA	unknown function
UHGV-0133464_35	UniRef90	UniRef90_A0A3D4T790	YopX domain-containing protein	NA
UHGV-0133464_35	Structural annotation	PF18073	NA	NA
UHGV-0133464_38	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133464_38	UniRef90	UniRef90_R6DN39	Endodeoxyribonuclease RusA	NA
UHGV-0133464_38	eggNOG-mapper	610130.Closa_1371	endodeoxyribonuclease RusA	NA
UHGV-0133464_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0133464_38	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA