UHGV-0133516

Genome information

vOTU vOTU-020512

Genome length 43,911 bps

CDS count 70

Completeness 66.04% (medium-quality)

geNomad score 0.9501

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133516
vOTU ID	vOTU-020512
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367998
BioSample	SAMN03283240
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	66.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9501
Virus hallmark genes (geNomad)	20
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.98
Jumbo phage	No

Genome content
Genome length	43,911 bps
GC content	36.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	86.93%
Average CDS length	547.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133516_2	eggNOG-mapper	1410676.JNKL01000031_gene1683	NA	NA
UHGV-0133516_2	COG	COG5421	Transposase	NA
UHGV-0133516_3	UniRef90	UniRef90_R5ER66	Transposase IS4 family	NA
UHGV-0133516_3	eggNOG-mapper	762983.HMPREF9444_01204	Transposase	NA
UHGV-0133516_3	Pfam	PF14104	NA	DUF4277
UHGV-0133516_3	NCBIFam	NF033559.1	IS1634 family transposase	NA
UHGV-0133516_3	COG	COG5421	Transposase	NA
UHGV-0133516_4	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0133516_4	eggNOG-mapper	93220.LV28_19045	DNA circularisation protein N-terminus	NA
UHGV-0133516_4	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0133516_8	PHROG	phrog_177	tail protein	tail
UHGV-0133516_8	UniRef90	UniRef90_UPI00073576E6	baseplate protein	NA
UHGV-0133516_8	eggNOG-mapper	1524467.IV04_21445	tail protein	NA
UHGV-0133516_8	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0133516_8	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0133516_9	PHROG	phrog_177	tail protein	tail
UHGV-0133516_9	eggNOG-mapper	1150626.PHAMO_340063	Mu-like prophage tail protein	NA
UHGV-0133516_9	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0133516_10	UniRef90	UniRef90_R5EZ78	Prophage MuSo2	NA
UHGV-0133516_10	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0133516_10	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0133516_10	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0133516_10	COG	COG4384	NA	NA
UHGV-0133516_10	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0133516_12	PHROG	phrog_180	tail protein	tail
UHGV-0133516_12	UniRef90	UniRef90_R5EKZ3	Mu-like prophage protein gp46	NA
UHGV-0133516_12	eggNOG-mapper	205922.Pfl01_1161	Phage protein GP46	NA
UHGV-0133516_12	Pfam	PF07409	NA	GP46
UHGV-0133516_12	COG	COG4381	NA	NA
UHGV-0133516_12	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0133516_13	PHROG	phrog_2103	baseplate protein	tail
UHGV-0133516_13	eggNOG-mapper	296591.Bpro_3733	Baseplate J-like protein	NA
UHGV-0133516_13	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0133516_13	COG	COG3299	NA	NA
UHGV-0133516_15	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0133516_15	eggNOG-mapper	1150626.PHAMO_340062	DNA circulation protein	NA
UHGV-0133516_15	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0133516_17	PHROG	phrog_177	tail protein	tail
UHGV-0133516_17	UniRef90	UniRef90_A0A2S7JEJ9	Baseplate protein	NA
UHGV-0133516_17	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-0133516_17	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0133516_17	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0133516_18	PHROG	phrog_3423	NA	unknown function
UHGV-0133516_18	UniRef90	UniRef90_UPI000362C6BC	integrase arm-type DNA-binding domain-containing protein	NA
UHGV-0133516_18	eggNOG-mapper	696748.ASU2_00435	Belongs to the 'phage' integrase family	NA
UHGV-0133516_18	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0133516_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133516_19	Structural annotation	PF09386, NF041264, COG4453	NA	NA
UHGV-0133516_22	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0133516_22	UniRef90	UniRef90_A0A239RUF6	Putative membrane protein	NA
UHGV-0133516_23	PHROG	phrog_1281	NA	unknown function
UHGV-0133516_23	UniRef90	UniRef90_UPI0009DD8AAA	NA	NA
UHGV-0133516_23	eggNOG-mapper	742821.HMPREF9464_01844	Phage-associated protein	NA
UHGV-0133516_23	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0133516_23	COG	COG3600	NA	NA
UHGV-0133516_23	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0133516_25	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0133516_25	UniRef90	UniRef90_A0A8H9DSB1	Bro-N domain-containing protein	NA
UHGV-0133516_25	eggNOG-mapper	683083.C414_000080039	BRO family, N-terminal domain	NA
UHGV-0133516_25	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133516_25	COG	COG3617	Prophage antirepressor	NA
UHGV-0133516_25	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0133516_27	Structural annotation	PF20505, NF001460	NA	NA
UHGV-0133516_38	UniRef90	UniRef90_A0A2X0V9I1	Predicted transcriptional regulator	NA
UHGV-0133516_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0133516_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133516_39	PHROG	phrog_5763	NA	unknown function
UHGV-0133516_39	UniRef90	UniRef90_A0A377JV05	V-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0133516_39	eggNOG-mapper	613026.HRAG_00945	NA	NA
UHGV-0133516_40	PHROG	phrog_1281	NA	unknown function
UHGV-0133516_40	UniRef90	UniRef90_UPI000689D567	NA	NA
UHGV-0133516_40	eggNOG-mapper	1449345.JHWC01000006_gene977	NA	NA
UHGV-0133516_40	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0133516_40	COG	COG3600	NA	NA
UHGV-0133516_40	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0133516_41	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0133516_41	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0133516_41	UniRef90	UniRef90_F3QJB3	Peptidase S24-like protein	NA
UHGV-0133516_41	eggNOG-mapper	469610.HMPREF0189_01093	Peptidase S24-like	NA
UHGV-0133516_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133516_41	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0133516_41	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0133516_41	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0133516_42	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133516_42	UniRef90	UniRef90_UPI000F531EE6	Cro/CI family transcriptional regulator	NA
UHGV-0133516_42	eggNOG-mapper	765910.MARPU_05625	NA	NA
UHGV-0133516_44	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0133516_44	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0133516_44	UniRef90	UniRef90_A0A7U3MFN3	DNA polymerase III epsilon subunit protein	NA
UHGV-0133516_44	eggNOG-mapper	556269.ACDQ01000008_gene1741	Exonuclease	NA
UHGV-0133516_44	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0133516_44	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0133516_44	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0133516_45	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0133516_45	Structural annotation	PF06530	NA	NA
UHGV-0133516_47	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0133516_47	UniRef90	UniRef90_B9KGH8	Putative antirepressor, BRO family	NA
UHGV-0133516_47	eggNOG-mapper	683083.C414_000080039	BRO family, N-terminal domain	NA
UHGV-0133516_47	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133516_47	COG	COG3617	Prophage antirepressor	NA
UHGV-0133516_47	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0133516_48	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0133516_49	PHROG	phrog_824	NA	unknown function
UHGV-0133516_49	UniRef90	UniRef90_UPI000375638B	VRR-NUC domain-containing protein	NA
UHGV-0133516_49	eggNOG-mapper	1121935.AQXX01000130_gene2430	VRR-NUC domain	NA
UHGV-0133516_49	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0133516_49	Structural annotation	PF08774	NA	NA
UHGV-0133516_50	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0133516_50	PHROG	phrog_7	endolysin	lysis
UHGV-0133516_50	UniRef90	UniRef90_A0A662Z686	Lysozyme	NA
UHGV-0133516_50	eggNOG-mapper	10753.B7SSN6_BPNF	Phage lysozyme	NA
UHGV-0133516_50	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0133516_50	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0133516_53	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0133516_53	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133516_53	UniRef90	UniRef90_R5EZA4	Restriction endonuclease	NA
UHGV-0133516_53	eggNOG-mapper	1123302.KB904184_gene997	Endonuclease	NA
UHGV-0133516_53	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133516_53	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133516_53	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0133516_54	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0133516_54	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0133516_54	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0133516_54	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0133516_54	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0133516_54	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0133516_54	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0133516_55	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0133516_55	UniRef90	UniRef90_A0A2S4LXH4	Phage terminase large subunit-like protein	NA
UHGV-0133516_55	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0133516_55	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0133516_55	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0133516_55	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133516_55	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0133516_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0133516_56	UniRef90	UniRef90_A0A3D4G7C4	Phage portal protein	NA
UHGV-0133516_56	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0133516_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0133516_56	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0133516_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0133516_56	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0133516_57	KOfam	K06904	NA	NA
UHGV-0133516_57	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0133516_57	UniRef90	UniRef90_A0A6L6YJ61	HK97 family phage prohead protease	NA
UHGV-0133516_57	eggNOG-mapper	2342.SOPEG_1843	Prohead protease	NA
UHGV-0133516_57	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0133516_57	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0133516_57	COG	COG3740	Phage head maturation protease	NA
UHGV-0133516_57	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0133516_58	PHROG	phrog_10	major head protein	head and packaging
UHGV-0133516_58	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0133516_58	eggNOG-mapper	1415780.JPOG01000001_gene1580	Phage capsid family	NA
UHGV-0133516_58	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0133516_58	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0133516_58	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0133516_58	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0133516_59	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0133516_59	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-0133516_59	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0133516_59	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0133516_59	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0133516_60	PHROG	phrog_25	head closure Hc1	connector
UHGV-0133516_60	UniRef90	UniRef90_A0A7X2CI04	Phage head closure protein	NA
UHGV-0133516_60	eggNOG-mapper	175950.Q8HAC9_9CAUD	Phage head-tail joining protein	NA
UHGV-0133516_60	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0133516_60	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0133516_62	PHROG	phrog_209	portal protein	head and packaging
UHGV-0133516_62	eggNOG-mapper	279714.FuraDRAFT_0282	NA	NA
UHGV-0133516_62	Structural annotation	PF09646	NA	NA
UHGV-0133516_63	PHROG	phrog_165	tail sheath	tail
UHGV-0133516_63	UniRef90	UniRef90_R5ELR7	Mu tail sheath family protein	NA
UHGV-0133516_63	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0133516_63	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0133516_63	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0133516_63	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0133516_63	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0133516_64	PHROG	phrog_185	tail tube protein	tail
UHGV-0133516_64	UniRef90	UniRef90_A0A2D0IGM7	Phage tail protein	NA
UHGV-0133516_64	eggNOG-mapper	343509.SG0718	phage tail	NA
UHGV-0133516_64	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0133516_64	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0133516_65	eggNOG-mapper	1224136.AMFN01000003_gene3617	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0133516_65	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0133516_66	PHROG	phrog_8125	tail length tape measure protein	tail
UHGV-0133516_66	UniRef90	UniRef90_A0A5C7NKL0	Phage tail tape measure protein (Fragment)	NA
UHGV-0133516_66	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0133516_66	COG	COG5412	Phage-related protein	NA
UHGV-0133516_66	Structural annotation	TIGR01760	NA	NA
UHGV-0133516_67	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0133516_67	UniRef90	UniRef90_R5EKZ8	DNA_circ_N domain-containing protein	NA
UHGV-0133516_67	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0133516_67	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0133516_67	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0133516_67	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0133516_69	PHROG	phrog_177	tail protein	tail
UHGV-0133516_69	UniRef90	UniRef90_UPI001F13B36D	baseplate protein	NA
UHGV-0133516_69	eggNOG-mapper	1524467.IV04_21445	tail protein	NA
UHGV-0133516_69	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0133516_69	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0133516_69	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0133516_70	UniRef90	UniRef90_UPI00070B0067	phage baseplate assembly protein V	NA
UHGV-0133516_70	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0133516_70	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0133516_70	COG	COG4384	NA	NA