UHGV-0133578

Genome information

Genome length 36,682 bps

CDS count 61

Completeness 84.35% (medium-quality)

geNomad score 0.9577

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133578
vOTU ID	vOTU-040264
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_389248
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9577
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.93
Jumbo phage	No

Genome content
Genome length	36,682 bps
GC content	35.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.18%
Average CDS length	551.75 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133578_1	KOfam	K14059	int; integrase	NA
UHGV-0133578_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0133578_1	UniRef90	UniRef90_A0A1C6FGR9	Integrase	NA
UHGV-0133578_1	eggNOG-mapper	879310.HMPREF9162_2200	Belongs to the 'phage' integrase family	NA
UHGV-0133578_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0133578_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133578_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133578_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0133578_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0133578_2	UniRef90	UniRef90_A0A412DTW3	Abi family protein	NA
UHGV-0133578_2	eggNOG-mapper	585394.RHOM_10830	Abi-like protein	NA
UHGV-0133578_2	PADLOC	AbiD	AbiD	Abi
UHGV-0133578_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0133578_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0133578_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0133578_4	eggNOG-mapper	471855.Shel_12440	TM2 domain	NA
UHGV-0133578_4	Pfam	PF14471	NA	DUF4428
UHGV-0133578_4	COG	COG2314	NA	NA
UHGV-0133578_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133578_7	UniRef90	UniRef90_A0A356CYS7	XRE family transcriptional regulator	NA
UHGV-0133578_7	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0133578_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133578_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133578_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0133578_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0133578_8	UniRef90	UniRef90_UPI0014131030	helix-turn-helix transcriptional regulator	NA
UHGV-0133578_8	eggNOG-mapper	445972.ANACOL_00136	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0133578_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133578_8	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0133578_15	PHROG	phrog_4068	NA	unknown function
UHGV-0133578_15	Structural annotation	PF06657	NA	NA
UHGV-0133578_18	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133578_18	UniRef90	UniRef90_UPI000952E6A4	YqaJ viral recombinase family protein	NA
UHGV-0133578_18	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0133578_18	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0133578_18	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0133578_18	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0133578_18	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0133578_19	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0133578_19	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133578_19	UniRef90	UniRef90_A0A3D3Y007	Recombinase RecT	NA
UHGV-0133578_19	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0133578_19	Pfam	PF03837	RecT family	RecT
UHGV-0133578_19	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0133578_19	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0133578_19	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0133578_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0133578_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133578_21	UniRef90	UniRef90_UPI000F51CB6E	single-stranded DNA-binding protein	NA
UHGV-0133578_21	eggNOG-mapper	1410617.JHXH01000001_gene879	Single-stranded DNA-binding protein	NA
UHGV-0133578_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0133578_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0133578_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0133578_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0133578_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0133578_22	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133578_22	UniRef90	UniRef90_UPI0019157277	NA	NA
UHGV-0133578_22	eggNOG-mapper	1507.HMPREF0262_00435	NA	NA
UHGV-0133578_22	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0133578_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133578_22	Structural annotation	PF14297	NA	NA
UHGV-0133578_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0133578_23	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133578_23	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0133578_23	eggNOG-mapper	1120985.AUMI01000019_gene2247	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0133578_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0133578_23	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0133578_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133578_24	UniRef90	UniRef90_UPI001063DBFB	HNH endonuclease	NA
UHGV-0133578_24	eggNOG-mapper	1007096.BAGW01000031_gene126	HNH endonuclease	NA
UHGV-0133578_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133578_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133578_24	Structural annotation	COG1403	NA	NA
UHGV-0133578_25	PHROG	phrog_2164	NA	unknown function
UHGV-0133578_25	eggNOG-mapper	546275.FUSPEROL_02061	NA	NA
UHGV-0133578_27	PHROG	phrog_22543	NA	unknown function
UHGV-0133578_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133578_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0133578_30	PHROG	phrog_8728	NA	unknown function
UHGV-0133578_30	eggNOG-mapper	1235792.C808_01965	HipA-like C-terminal domain	NA
UHGV-0133578_30	COG	COG3550	Serine/threonine protein kinase HipA, toxin component of the HipAB toxin-antitoxin module	NA
UHGV-0133578_32	PHROG	phrog_8026	NA	unknown function
UHGV-0133578_32	UniRef90	UniRef90_UPI001ABB2EF9	HIRAN domain-containing protein	NA
UHGV-0133578_32	eggNOG-mapper	1235792.C808_01964	HIRAN domain	NA
UHGV-0133578_32	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0133578_33	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0133578_33	UniRef90	UniRef90_UPI001D01EB7C	helix-turn-helix domain-containing protein	NA
UHGV-0133578_33	eggNOG-mapper	693746.OBV_18020	transposase activity	NA
UHGV-0133578_33	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0133578_33	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0133578_33	Structural annotation	PF07141	NA	NA
UHGV-0133578_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133578_34	PHROG	phrog_10250	NA	unknown function
UHGV-0133578_34	UniRef90	UniRef90_UPI000F53EBFA	PBSX family phage terminase large subunit	NA
UHGV-0133578_34	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0133578_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133578_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133578_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133578_34	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133578_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0133578_35	UniRef90	UniRef90_UPI000F52B2DB	phage portal protein	NA
UHGV-0133578_35	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0133578_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133578_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0133578_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0133578_36	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0133578_36	UniRef90	UniRef90_UPI000F528CC0	minor capsid protein	NA
UHGV-0133578_36	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-0133578_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0133578_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0133578_36	COG	COG2369	NA	NA
UHGV-0133578_37	Structural annotation	NF041921	NA	NA
UHGV-0133578_39	eggNOG-mapper	59374.Fisuc_2165	NA	NA
UHGV-0133578_42	PHROG	phrog_11939	NA	unknown function
UHGV-0133578_42	eggNOG-mapper	41431.PCC8801_4302	NA	NA
UHGV-0133578_43	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0133578_43	UniRef90	UniRef90_UPI000F53BD28	NA	NA
UHGV-0133578_43	eggNOG-mapper	1071073.KI530547_gene3811	NA	NA
UHGV-0133578_43	Pfam	PF14265	NA	DUF4355
UHGV-0133578_43	Structural annotation	PF14265	NA	NA
UHGV-0133578_44	PHROG	phrog_247	major head protein	head and packaging
UHGV-0133578_44	UniRef90	UniRef90_A0A7C6NZC6	Phage coat protein	NA
UHGV-0133578_44	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0133578_44	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0133578_44	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0133578_45	UniRef90	UniRef90_UPI000F546010	phage head-tail connector protein	NA
UHGV-0133578_45	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0133578_45	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0133578_45	Structural annotation	TIGR01560	NA	NA
UHGV-0133578_46	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0133578_47	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0133578_47	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0133578_47	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0133578_48	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0133578_49	UniRef90	UniRef90_A0A3D2JJR9	Phage tail protein	NA
UHGV-0133578_49	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0133578_50	UniRef90	UniRef90_UPI000F53F45B	NA	NA
UHGV-0133578_50	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0133578_50	Pfam	PF16478	NA	DUF5055
UHGV-0133578_50	Structural annotation	PF16478	NA	NA
UHGV-0133578_52	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0133578_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0133578_52	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0133578_52	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0133578_53	PHROG	phrog_1194	NA	unknown function
UHGV-0133578_53	eggNOG-mapper	1280692.AUJL01000025_gene2069	NA	NA
UHGV-0133578_54	PHROG	phrog_23052	NA	unknown function
UHGV-0133578_54	UniRef90	UniRef90_A0A0D0SC74	TWA4_scaffold00001, whole genome shotgun sequence	NA
UHGV-0133578_54	eggNOG-mapper	946235.CAER01000065_gene2433	NA	NA
UHGV-0133578_54	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0133578_56	eggNOG-mapper	1410617.JHXH01000006_gene232	NA	NA
UHGV-0133578_57	PHROG	phrog_35892	NA	unknown function
UHGV-0133578_57	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0133578_59	PHROG	phrog_199	holin	lysis
UHGV-0133578_59	UniRef90	UniRef90_W0U6A0	Holin	NA
UHGV-0133578_59	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0133578_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0133578_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0133578_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0133578_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0133578_60	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133578_60	PHROG	phrog_297	holin	lysis
UHGV-0133578_60	UniRef90	UniRef90_R5KPD2	Peptidase C51 domain-containing protein	NA
UHGV-0133578_60	eggNOG-mapper	887929.HMP0721_1250	hydrolase, family 25	NA
UHGV-0133578_60	Pfam	PF05257	CHAP domain	CHAP
UHGV-0133578_60	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0133578_60	Pfam	PF01476	LysM domain	LysM
UHGV-0133578_60	COG	COG1388	LysM repeat	NA
UHGV-0133578_60	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA