UHGV-0133668

Genome information

Genome length 24,966 bps

CDS count 30

Completeness 72.08% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133668
vOTU ID	vOTU-032366
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370042
BioSample	SAMN03281007
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.56
Jumbo phage	No

Genome content
Genome length	24,966 bps
GC content	46.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	97.28%
Average CDS length	812.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133668_1	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0133668_1	UniRef90	UniRef90_A0A1L7GTT8	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0133668_1	eggNOG-mapper	1423755.BAML01000009_gene780	NA	NA
UHGV-0133668_1	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0133668_1	Structural annotation	PF13022	NA	NA
UHGV-0133668_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133668_2	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0133668_2	UniRef90	UniRef90_A0A1L7GTF3	Terminase	NA
UHGV-0133668_2	eggNOG-mapper	12348.A4L7R3_BPLLH	Pfam:Terminase_3C	NA
UHGV-0133668_2	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0133668_2	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0133668_2	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133668_2	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0133668_3	PHROG	phrog_533	portal protein	head and packaging
UHGV-0133668_3	UniRef90	UniRef90_A0A1L7GTA3	Capsid protein	NA
UHGV-0133668_3	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0133668_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133668_3	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0133668_3	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0133668_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0133668_4	UniRef90	UniRef90_A0A3C1I7B3	Capsid protein	NA
UHGV-0133668_4	eggNOG-mapper	334390.LAF_0931	Phage minor capsid protein 2	NA
UHGV-0133668_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0133668_4	COG	COG2369	NA	NA
UHGV-0133668_4	Structural annotation	PF06152	NA	NA
UHGV-0133668_5	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0133668_5	UniRef90	UniRef90_V7I0V6	Phage minor structural protein GP20	NA
UHGV-0133668_5	eggNOG-mapper	272626.lin0108	Phage minor structural protein GP20	NA
UHGV-0133668_5	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0133668_5	Structural annotation	PF06810	NA	NA
UHGV-0133668_6	PHROG	phrog_544	major head protein	head and packaging
UHGV-0133668_6	UniRef90	UniRef90_UPI0006652B18	N4-gp56 family major capsid protein	NA
UHGV-0133668_6	eggNOG-mapper	1460635.JCM19038_3466	NA	NA
UHGV-0133668_6	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0133668_6	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133668_7	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0133668_7	UniRef90	UniRef90_A0A376H5I9	Protein gp8	NA
UHGV-0133668_7	eggNOG-mapper	1423790.BN53_04220	NA	NA
UHGV-0133668_8	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0133668_8	UniRef90	UniRef90_A0A1L7GTK6	Capsid protein	NA
UHGV-0133668_8	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-0133668_8	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0133668_8	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0133668_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0133668_9	UniRef90	UniRef90_A0A855ZLE5	Capsid protein	NA
UHGV-0133668_9	eggNOG-mapper	52979.O03933_9CAUD	Minor capsid protein	NA
UHGV-0133668_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0133668_9	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0133668_10	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0133668_10	UniRef90	UniRef90_UPI001E54F846	minor capsid protein	NA
UHGV-0133668_10	eggNOG-mapper	762051.LKI_09705	Minor capsid protein from bacteriophage	NA
UHGV-0133668_10	Structural annotation	PF12691	NA	NA
UHGV-0133668_11	PHROG	phrog_820	major tail protein	tail
UHGV-0133668_11	UniRef90	UniRef90_A0A855ZMF8	Capsid protein	NA
UHGV-0133668_11	eggNOG-mapper	52979.O03972_9CAUD	NA	NA
UHGV-0133668_12	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-0133668_12	Structural annotation	PF10666	NA	NA
UHGV-0133668_13	PHROG	phrog_706	NA	unknown function
UHGV-0133668_13	UniRef90	UniRef90_A0A0R1T0K3	Bacteriophage Gp15 protein	NA
UHGV-0133668_13	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0133668_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0133668_13	Structural annotation	PF06854	NA	NA
UHGV-0133668_14	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0133668_14	UniRef90	UniRef90_UPI000668A574	tape measure protein	NA
UHGV-0133668_14	eggNOG-mapper	438780.D2KRB7_9CAUD	peptidoglycan catabolic process	NA
UHGV-0133668_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0133668_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0133668_14	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0133668_15	PHROG	phrog_30835	NA	unknown function
UHGV-0133668_15	UniRef90	UniRef90_A0A855ZLK8	Phage tail family protein	NA
UHGV-0133668_15	eggNOG-mapper	438780.D2KRB8_9CAUD	Phage tail protein	NA
UHGV-0133668_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0133668_15	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0133668_16	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0133668_16	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-0133668_16	UniRef90	UniRef90_A0A855ZL54	NlpC/P60 domain-containing protein	NA
UHGV-0133668_16	eggNOG-mapper	349123.Lreu23DRAFT_3983	CHAP domain	NA
UHGV-0133668_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0133668_16	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0133668_16	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0133668_17	PHROG	phrog_16040	virion structural protein	head and packaging
UHGV-0133668_17	UniRef90	UniRef90_UPI0012DB7793	gp58-like family protein	NA
UHGV-0133668_17	eggNOG-mapper	334390.LAF_0482	peptidase	NA
UHGV-0133668_17	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0133668_19	PHROG	phrog_14733	NA	unknown function
UHGV-0133668_20	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0133668_20	PHROG	phrog_17955	esterase/lipase	other
UHGV-0133668_20	UniRef90	UniRef90_A0A0R2EC16	Gdsl family lipase	NA
UHGV-0133668_20	eggNOG-mapper	1423814.HMPREF0549_1800	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0133668_20	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0133668_20	Structural annotation	PF16255, MF_01639, NF007819, COG2755	NA	NA
UHGV-0133668_21	PHROG	phrog_6183	minor tail protein	tail
UHGV-0133668_21	UniRef90	UniRef90_UPI00196261D6	BppU family phage baseplate upper protein	NA
UHGV-0133668_21	eggNOG-mapper	557436.Lreu_0853	NA	NA
UHGV-0133668_21	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0133668_21	Structural annotation	PF10651	NA	NA
UHGV-0133668_22	PHROG	phrog_27088	NA	unknown function
UHGV-0133668_23	PHROG	phrog_1009	NA	unknown function
UHGV-0133668_23	UniRef90	UniRef90_D2KRC5	NA	NA
UHGV-0133668_23	eggNOG-mapper	1203076.CAKF01000006_gene559	NA	NA
UHGV-0133668_24	PHROG	phrog_2609	holin	lysis
UHGV-0133668_24	UniRef90	UniRef90_UPI00062D5602	phage holin, LLH family	NA
UHGV-0133668_24	eggNOG-mapper	1423724.BAMM01000023_gene1895	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0133668_24	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0133668_24	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0133668_25	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133668_25	PHROG	phrog_291	endolysin	lysis
UHGV-0133668_25	UniRef90	UniRef90_A0A6M3BE13	Lysozyme	NA
UHGV-0133668_25	eggNOG-mapper	349123.Lreu23DRAFT_3849	hydrolase, family 25	NA
UHGV-0133668_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0133668_25	Pfam	PF00570	HRDC domain	HRDC
UHGV-0133668_25	Pfam	PF01476	LysM domain	LysM
UHGV-0133668_25	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0133668_25	COG	COG1388	LysM repeat	NA
UHGV-0133668_25	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0133668_26	PHROG	phrog_8487	NA	unknown function
UHGV-0133668_26	UniRef90	UniRef90_O48383	Orf111	NA
UHGV-0133668_26	eggNOG-mapper	438780.D2KRC9_9CAUD	Streptococcus thermophilus bacteriophage Gp111 protein	NA
UHGV-0133668_26	Pfam	PF07410	Streptococcus thermophilus bacteriophage Gp111 protein	Phage_Gp111
UHGV-0133668_26	Structural annotation	PF07410	NA	NA
UHGV-0133668_27	PHROG	phrog_37096	NA	unknown function
UHGV-0133668_28	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133668_28	UniRef90	UniRef90_A0A0A6RZD5	NA	NA
UHGV-0133668_28	eggNOG-mapper	873448.STRPO_0177	NA	NA
UHGV-0133668_28	Structural annotation	PF17375	NA	NA
UHGV-0133668_29	KOfam	K02245	comGC; competence protein ComGC	NA
UHGV-0133668_29	UniRef90	UniRef90_A0A0G9GAP7	Competence protein	NA
UHGV-0133668_29	eggNOG-mapper	334390.LAF_0546	competence protein ComGC	NA
UHGV-0133668_29	COG	COG4537	Competence protein ComGC	NA
UHGV-0133668_30	KOfam	K02246	comGD; competence protein ComGD	NA
UHGV-0133668_30	UniRef90	UniRef90_A0A0F4HAZ4	Prepilin-type N-terminal cleavage/methylation domain-containing protein	NA
UHGV-0133668_30	eggNOG-mapper	557436.Lreu_0556	general secretion pathway protein	NA
UHGV-0133668_30	COG	COG2165	Type II secretory pathway, pseudopilin PulG	NA