UHGV-0133691

Genome information

Genome length 32,105 bps

CDS count 47

Completeness 61.65% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133691
vOTU ID	vOTU-024730
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369445
BioSample	SAMN03283281
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.9
Jumbo phage	No

Genome content
Genome length	32,105 bps
GC content	40.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	95.28%
Average CDS length	655.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133691_1	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133691_1	UniRef90	UniRef90_A0A482MHZ5	Nucleotide binding protein	NA
UHGV-0133691_1	Pfam	PF13479	AAA domain	AAA_24
UHGV-0133691_1	Structural annotation	PF13479, MF_00350, TIGR01618, COG2874	NA	NA
UHGV-0133691_2	PHROG	phrog_21101	NA	unknown function
UHGV-0133691_2	UniRef90	UniRef90_UPI0005D13521	NA	NA
UHGV-0133691_2	eggNOG-mapper	1514668.JOOA01000002_gene1708	NA	NA
UHGV-0133691_2	Pfam	PF07866	NA	DUF1653
UHGV-0133691_2	COG	COG4728	NA	NA
UHGV-0133691_2	Structural annotation	PF07866, NF038082, COG4728	NA	NA
UHGV-0133691_3	PHROG	phrog_3724	NA	unknown function
UHGV-0133691_3	Pfam	PF05037	NA	DUF669
UHGV-0133691_3	Structural annotation	PF05037, MF_00292, NF011800, COG2053	NA	NA
UHGV-0133691_4	KOfam	K00096	araM, egsA; glycerol-1-phosphate dehydrogenase [NAD(P)+] [EC:1.1.1.261]	NA
UHGV-0133691_4	UniRef90	UniRef90_A0A0G0JV52	Glycerol-1-phosphate dehydrogenase [NAD(P)+]	NA
UHGV-0133691_4	eggNOG-mapper	1410622.JNKY01000014_gene119	Iron-containing alcohol dehydrogenase	NA
UHGV-0133691_4	Pfam	PF13685	Iron-containing alcohol dehydrogenase	Fe-ADH_2
UHGV-0133691_4	COG	COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	NA
UHGV-0133691_5	KOfam	K01091	gph; phosphoglycolate phosphatase [EC:3.1.3.18]	NA
UHGV-0133691_5	UniRef90	UniRef90_UPI00196031F4	HAD family hydrolase	NA
UHGV-0133691_5	eggNOG-mapper	471875.RUMLAC_01935	Haloacid dehalogenase-like hydrolase	NA
UHGV-0133691_5	Pfam	PF13419	Haloacid dehalogenase-like hydrolase	HAD_2
UHGV-0133691_5	NCBIFam	TIGR01549.1	HAD-IA family hydrolase	NA
UHGV-0133691_5	COG	COG0546	Phosphoglycolate phosphatase, HAD superfamily	NA
UHGV-0133691_6	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-0133691_7	PHROG	phrog_3271	NA	unknown function
UHGV-0133691_7	UniRef90	UniRef90_A0A0F9M3C1	aGPT-Pplase2 domain-containing protein	NA
UHGV-0133691_7	eggNOG-mapper	1206545.S6C377_9CAUD	NA	NA
UHGV-0133691_7	Pfam	PF18724	Amino acid:DNA transferase	ADDT
UHGV-0133691_7	Structural annotation	PF18724, NF009788	NA	NA
UHGV-0133691_9	PHROG	phrog_800	terminase small subunit	head and packaging
UHGV-0133691_9	UniRef90	UniRef90_A0A7D3UYA3	Thymidylate kinase	NA
UHGV-0133691_9	eggNOG-mapper	462590.A9J510_BPPYU	kinase activity	NA
UHGV-0133691_9	Pfam	PF18748	5-hmdU DNA kinase	HMUDK_HMUD1
UHGV-0133691_9	Structural annotation	PF18748, MF_00109, NF005253, COG4639	NA	NA
UHGV-0133691_10	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0133691_10	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0133691_10	UniRef90	UniRef90_R6LQ85	Deoxyuridine 5'-triphosphate pyrophosphatase	NA
UHGV-0133691_10	eggNOG-mapper	397287.C807_01096	dUTPase	NA
UHGV-0133691_10	Pfam	PF00692	dUTPase	dUTPase
UHGV-0133691_10	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0133691_10	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0133691_11	PHROG	phrog_1485	NA	unknown function
UHGV-0133691_11	UniRef90	UniRef90_UPI0019D50843	nucleotide modification associated domain-containing protein	NA
UHGV-0133691_11	eggNOG-mapper	1347392.CCEZ01000060_gene3286	NA	NA
UHGV-0133691_11	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0133691_12	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0133691_12	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0133691_12	UniRef90	UniRef90_UPI00123B0758	thymidylate synthase	NA
UHGV-0133691_12	eggNOG-mapper	1218103.CIN01S_04_01690	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis	NA
UHGV-0133691_12	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0133691_12	COG	COG0207	Thymidylate synthase	NA
UHGV-0133691_12	Structural annotation	PF00303, MF_01686, NF002497, COG0207	NA	NA
UHGV-0133691_14	PHROG	phrog_24386	NA	unknown function
UHGV-0133691_14	eggNOG-mapper	478749.BRYFOR_08546	UMP catabolic process	NA
UHGV-0133691_14	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0133691_14	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0133691_15	UniRef90	UniRef90_A0A7V3AAF6	VRR-NUC domain-containing protein (Fragment)	NA
UHGV-0133691_15	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0133691_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0133691_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0133691_16	UniRef90	UniRef90_A0A7C5BUU6	DEAD/DEAH box helicase	NA
UHGV-0133691_16	eggNOG-mapper	545696.HOLDEFILI_03763	SNF2 family N-terminal domain	NA
UHGV-0133691_16	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0133691_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0133691_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0133691_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0133691_16	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0133691_18	PHROG	phrog_2319	NA	unknown function
UHGV-0133691_18	eggNOG-mapper	1327935.A0A060AH02_9CAUD	NA	NA
UHGV-0133691_18	Structural annotation	PF16900, MF_00720, NF005050	NA	NA
UHGV-0133691_19	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0133691_21	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0133691_22	PHROG	phrog_16490	NA	unknown function
UHGV-0133691_22	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0133691_27	PHROG	phrog_1220	head protein	head and packaging
UHGV-0133691_27	UniRef90	UniRef90_UPI000C7676C6	methyl-accepting chemotaxis protein	NA
UHGV-0133691_27	eggNOG-mapper	1033737.CAEV01000028_gene283	NA	NA
UHGV-0133691_27	Structural annotation	PF20747	NA	NA
UHGV-0133691_28	PHROG	phrog_538	minor tail protein	tail
UHGV-0133691_28	UniRef90	UniRef90_UPI000BBC383E	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0133691_28	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0133691_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0133691_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0133691_29	PHROG	phrog_36410	NA	unknown function
UHGV-0133691_29	UniRef90	UniRef90_A0A7X9C3E1	Phage tail family protein	NA
UHGV-0133691_29	eggNOG-mapper	1211817.CCAT010000079_gene1379	Phage tail protein	NA
UHGV-0133691_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0133691_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0133691_29	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0133691_30	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0133691_30	UniRef90	UniRef90_A0A3E3ILY3	Phage tail tape measure protein	NA
UHGV-0133691_30	eggNOG-mapper	1408324.JNJK01000006_gene1391	Phage-related minor tail protein	NA
UHGV-0133691_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0133691_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0133691_30	COG	COG5283	Phage-related tail protein	NA
UHGV-0133691_30	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0133691_31	PHROG	phrog_6541	NA	unknown function
UHGV-0133691_32	PHROG	phrog_6280	NA	unknown function
UHGV-0133691_32	UniRef90	UniRef90_A0A8J6PH67	Esterase	NA
UHGV-0133691_32	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-0133691_33	PHROG	phrog_6686	tail tube protein	tail
UHGV-0133691_33	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0133691_33	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0133691_33	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0133691_34	PHROG	phrog_7585	NA	unknown function
UHGV-0133691_34	eggNOG-mapper	536232.CLM_3438	NA	NA
UHGV-0133691_34	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0133691_35	eggNOG-mapper	1567015.A0A0A7RUL9_9VIRU	NA	NA
UHGV-0133691_35	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0133691_36	PHROG	phrog_8435	NA	unknown function
UHGV-0133691_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0133691_37	PHROG	phrog_4020	NA	unknown function
UHGV-0133691_37	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0133691_38	Structural annotation	PF08593	NA	NA
UHGV-0133691_39	PHROG	phrog_29	major head protein	head and packaging
UHGV-0133691_39	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0133691_39	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-0133691_39	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0133691_39	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0133691_40	PHROG	phrog_909	major head protein	head and packaging
UHGV-0133691_40	UniRef90	UniRef90_A0A4D6BHE5	Major capsid protein	NA
UHGV-0133691_40	eggNOG-mapper	1158612.I580_01911	NA	NA
UHGV-0133691_40	Structural annotation	PF02924	NA	NA
UHGV-0133691_41	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0133691_41	eggNOG-mapper	537874.B3GW02_9CAUD	NA	NA
UHGV-0133691_41	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0133691_43	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0133691_43	UniRef90	UniRef90_A0A1C6BCQ4	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0133691_43	eggNOG-mapper	748727.CLJU_c31360	Portal protein	NA
UHGV-0133691_43	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0133691_43	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0133691_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0133691_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0133691_44	PHROG	phrog_291	endolysin	lysis
UHGV-0133691_44	UniRef90	UniRef90_R7FBP9	Glycosyl hydrolase family 25	NA
UHGV-0133691_44	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0133691_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0133691_44	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133691_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0133691_44	Structural annotation	PF01183, MF_00691, TIGR02869, NF003814, COG3757	NA	NA
UHGV-0133691_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0133691_45	UniRef90	UniRef90_UPI0008331C88	phage portal protein	NA
UHGV-0133691_45	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0133691_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133691_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0133691_46	eggNOG-mapper	642492.Clole_0840	NA	NA