UHGV-0133699

Genome information

Genome length 32,563 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133699
vOTU ID	vOTU-074864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369438
BioSample	SAMN03283281
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.08
Jumbo phage	No

Genome content
Genome length	32,563 bps
GC content	38.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.73%
Average CDS length	644.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133699_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0133699_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0133699_2	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0133699_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0133699_3	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0133699_3	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0133699_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0133699_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0133699_3	COG	COG4926	Phage-related protein	NA
UHGV-0133699_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0133699_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0133699_4	UniRef90	UniRef90_UPI00189E4294	phage tail family protein	NA
UHGV-0133699_4	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0133699_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0133699_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0133699_5	PHROG	phrog_23464	NA	unknown function
UHGV-0133699_5	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0133699_5	COG	COG5283	Phage-related tail protein	NA
UHGV-0133699_5	Structural annotation	COG3941	NA	NA
UHGV-0133699_7	eggNOG-mapper	272562.CA_C0058	NA	NA
UHGV-0133699_8	PHROG	phrog_885	major tail protein	tail
UHGV-0133699_8	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0133699_8	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0133699_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0133699_9	Structural annotation	PF12691	NA	NA
UHGV-0133699_10	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0133699_10	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0133699_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0133699_10	Structural annotation	TIGR01725	NA	NA
UHGV-0133699_11	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0133699_11	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0133699_11	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0133699_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0133699_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0133699_12	PHROG	phrog_5223	neck protein	connector
UHGV-0133699_12	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0133699_12	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0133699_12	Structural annotation	TIGR01560	NA	NA
UHGV-0133699_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0133699_13	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0133699_13	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0133699_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0133699_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0133699_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0133699_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0133699_14	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0133699_14	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0133699_14	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0133699_14	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0133699_14	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0133699_14	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0133699_14	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0133699_15	PHROG	phrog_12	portal protein	head and packaging
UHGV-0133699_15	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0133699_15	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0133699_15	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0133699_15	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0133699_15	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0133699_16	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0133699_16	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0133699_16	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0133699_16	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0133699_16	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0133699_16	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133699_16	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0133699_17	PHROG	phrog_1066	NA	unknown function
UHGV-0133699_17	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0133699_17	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0133699_18	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133699_18	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0133699_18	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0133699_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133699_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133699_19	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0133699_19	Structural annotation	TIGR01636	NA	NA
UHGV-0133699_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133699_20	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0133699_20	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0133699_22	PHROG	phrog_824	NA	unknown function
UHGV-0133699_22	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0133699_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0133699_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0133699_22	Structural annotation	PF08774	NA	NA
UHGV-0133699_23	PHROG	phrog_30343	NA	unknown function
UHGV-0133699_23	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0133699_23	Structural annotation	PF11039, MF_02210, TIGR03585, COG1670	NA	NA
UHGV-0133699_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133699_25	UniRef90	UniRef90_A0A373KMT6	HNH endonuclease	NA
UHGV-0133699_25	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0133699_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133699_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133699_25	Structural annotation	COG1403	NA	NA
UHGV-0133699_28	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0133699_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0133699_28	UniRef90	UniRef90_UPI001C034617	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0133699_28	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0133699_28	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0133699_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0133699_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0133699_28	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0133699_29	PHROG	phrog_15609	NA	unknown function
UHGV-0133699_29	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0133699_29	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0133699_29	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0133699_30	PHROG	phrog_8470	NA	unknown function
UHGV-0133699_30	UniRef90	UniRef90_A0A1M7BII1	PcfJ-like protein	NA
UHGV-0133699_30	eggNOG-mapper	457412.RSAG_01172	PcfJ-like protein	NA
UHGV-0133699_30	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0133699_30	Structural annotation	PF14284	NA	NA
UHGV-0133699_35	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0133699_36	UniRef90	UniRef90_A0A373XYJ8	XRE family transcriptional regulator	NA
UHGV-0133699_36	eggNOG-mapper	887325.HMPREF0381_0113	NA	NA
UHGV-0133699_36	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0133699_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133699_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133699_37	UniRef90	UniRef90_A0A136WE02	Helix-turn-helix domain protein	NA
UHGV-0133699_37	eggNOG-mapper	279010.BL03621	Peptidase S24-like	NA
UHGV-0133699_37	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0133699_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0133699_37	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0133699_38	PHROG	phrog_1914	NA	unknown function
UHGV-0133699_38	UniRef90	UniRef90_UPI000E543E50	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0133699_38	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0133699_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0133699_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0133699_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0133699_39	UniRef90	UniRef90_A0A374DTF3	NA	NA
UHGV-0133699_40	KOfam	K14059	int; integrase	NA
UHGV-0133699_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0133699_40	UniRef90	UniRef90_UPI00164B8B01	site-specific integrase	NA
UHGV-0133699_40	eggNOG-mapper	1095750.HMPREF9970_1688	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0133699_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133699_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133699_40	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0133699_41	KOfam	K03088	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0133699_41	PHROG	phrog_1740	RNA polymerase sigma factor	transcription regulation
UHGV-0133699_41	UniRef90	UniRef90_A0A1G4W858	RNA polymerase sigma-70 factor, ECF subfamily	NA
UHGV-0133699_41	eggNOG-mapper	1499684.CCNP01000023_gene3381	Belongs to the sigma-70 factor family. ECF subfamily	NA
UHGV-0133699_41	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0133699_41	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0133699_41	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0133699_41	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0133699_41	Structural annotation	PF08281, PF04542, MF_00962, TIGR02985, COG1595	NA	NA
UHGV-0133699_44	Pfam	PF20234	NA	DUF6591
UHGV-0133699_44	Structural annotation	PF20234	NA	NA
UHGV-0133699_45	KOfam	K12132	prkC, stkP; eukaryotic-like serine/threonine-protein kinase [EC:2.7.11.1]	NA
UHGV-0133699_45	PHROG	phrog_2361	serine-threonine kinase	other
UHGV-0133699_45	UniRef90	UniRef90_R6MTM0	Protein kinase domain-containing protein	NA
UHGV-0133699_45	eggNOG-mapper	1280689.AUJC01000004_gene249	Protein kinase domain	NA
UHGV-0133699_45	PADLOC	Stk2	NA	NA
UHGV-0133699_45	Pfam	PF00069	Protein kinase domain	Pkinase
UHGV-0133699_45	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0133699_46	UniRef90	UniRef90_UPI001062ACBA	XRE family transcriptional regulator	NA
UHGV-0133699_46	eggNOG-mapper	537013.CLOSTMETH_00224	NA	NA