UHGV-0133792

Genome information

Genome length 36,689 bps

CDS count 53

Completeness 99.17% (high-quality)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133792
vOTU ID	vOTU-076500
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375558
BioSample	SAMN03653692
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.17% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.02
Jumbo phage	No

Genome content
Genome length	36,689 bps
GC content	41.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.33%
Average CDS length	648.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133792_1	KOfam	K14059	int; integrase	NA
UHGV-0133792_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0133792_1	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0133792_1	eggNOG-mapper	411460.RUMTOR_02457	NA	NA
UHGV-0133792_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0133792_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133792_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133792_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0133792_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0133792_2	UniRef90	UniRef90_A0A3R6X973	Abi family protein	NA
UHGV-0133792_2	eggNOG-mapper	397288.C806_00111	Abi-like protein	NA
UHGV-0133792_2	PADLOC	AbiD	AbiD	Abi
UHGV-0133792_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0133792_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0133792_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0133792_3	PHROG	phrog_87	metallo-protease	other
UHGV-0133792_3	UniRef90	UniRef90_R5IRU3	Predicted Zn peptidase	NA
UHGV-0133792_3	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0133792_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0133792_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0133792_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0133792_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0133792_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133792_4	UniRef90	UniRef90_A0A1Y4RLY2	Transcriptional regulator	NA
UHGV-0133792_4	eggNOG-mapper	742740.HMPREF9474_02604	sequence-specific DNA binding	NA
UHGV-0133792_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0133792_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133792_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0133792_5	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0133792_5	UniRef90	UniRef90_A0A417C403	XRE family transcriptional regulator	NA
UHGV-0133792_5	eggNOG-mapper	330396.A8ATD0_9CAUD	sequence-specific DNA binding	NA
UHGV-0133792_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0133792_7	PHROG	phrog_16447	NA	unknown function
UHGV-0133792_7	UniRef90	UniRef90_A0A8E3SN40	NA	NA
UHGV-0133792_7	eggNOG-mapper	1403390.U3PDZ3_9CAUD	NA	NA
UHGV-0133792_7	Pfam	PF10083	NA	DUF2321
UHGV-0133792_7	Structural annotation	PF10083, COG4306	NA	NA
UHGV-0133792_8	PHROG	phrog_6058	NA	unknown function
UHGV-0133792_8	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0133792_8	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0133792_8	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0133792_10	eggNOG-mapper	537007.BLAHAN_06453	sequence-specific DNA binding	NA
UHGV-0133792_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0133792_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133792_10	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0133792_11	PHROG	phrog_34638	NA	unknown function
UHGV-0133792_12	PHROG	phrog_20014	NA	unknown function
UHGV-0133792_12	eggNOG-mapper	411470.RUMGNA_02042	NA	NA
UHGV-0133792_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133792_14	eggNOG-mapper	97139.C824_00041	NA	NA
UHGV-0133792_14	Structural annotation	PF01446	NA	NA
UHGV-0133792_15	UniRef90	UniRef90_A0A417BW93	RNase H type-1 domain-containing protein	NA
UHGV-0133792_15	eggNOG-mapper	1121930.AQXG01000012_gene3211	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0133792_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0133792_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0133792_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0133792_17	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0133792_18	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0133792_18	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0133792_18	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0133792_19	PHROG	phrog_8470	NA	unknown function
UHGV-0133792_19	UniRef90	UniRef90_UPI000496E631	PcfJ domain-containing protein	NA
UHGV-0133792_19	eggNOG-mapper	610130.Closa_1108	PcfJ-like protein	NA
UHGV-0133792_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0133792_19	Structural annotation	PF14284	NA	NA
UHGV-0133792_20	PHROG	phrog_15077	NA	unknown function
UHGV-0133792_20	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0133792_20	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0133792_20	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0133792_21	PHROG	phrog_7566	NA	unknown function
UHGV-0133792_21	eggNOG-mapper	411902.CLOBOL_05695	NA	NA
UHGV-0133792_23	PHROG	phrog_23707	NA	unknown function
UHGV-0133792_23	UniRef90	UniRef90_A0A7G5MVV3	Alanine racemase	NA
UHGV-0133792_23	eggNOG-mapper	537007.BLAHAN_04222	NA	NA
UHGV-0133792_24	KOfam	K03744	lemA; LemA protein	NA
UHGV-0133792_24	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0133792_24	UniRef90	UniRef90_A0A6N2WCF4	LemA family protein	NA
UHGV-0133792_24	eggNOG-mapper	742740.HMPREF9474_02293	LemA family	NA
UHGV-0133792_24	Pfam	PF04011	LemA family	LemA
UHGV-0133792_24	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0133792_24	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0133792_25	PHROG	phrog_3886	NA	unknown function
UHGV-0133792_25	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-0133792_27	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0133792_28	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0133792_28	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0133792_28	UniRef90	UniRef90_UPI0015948491	site-specific DNA-methyltransferase	NA
UHGV-0133792_28	eggNOG-mapper	665950.HMPREF1025_02545	DNA methylase	NA
UHGV-0133792_28	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0133792_28	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0133792_28	COG	COG0863	DNA modification methylase	NA
UHGV-0133792_28	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0133792_29	PHROG	phrog_11237	NA	unknown function
UHGV-0133792_29	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0133792_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0133792_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133792_30	UniRef90	UniRef90_A0A373D5W6	HNH endonuclease	NA
UHGV-0133792_30	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0133792_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133792_31	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0133792_31	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0133792_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0133792_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0133792_32	UniRef90	UniRef90_A0A416BND4	Terminase	NA
UHGV-0133792_32	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0133792_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0133792_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0133792_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133792_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0133792_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0133792_33	UniRef90	UniRef90_A0A3E3ILZ4	Phage portal protein	NA
UHGV-0133792_33	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0133792_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0133792_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0133792_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0133792_33	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0133792_34	KOfam	K06904	NA	NA
UHGV-0133792_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0133792_34	UniRef90	UniRef90_UPI0018985D9B	HK97 family phage prohead protease	NA
UHGV-0133792_34	eggNOG-mapper	397288.C806_00074	Phage prohead protease, HK97 family	NA
UHGV-0133792_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0133792_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0133792_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0133792_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0133792_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0133792_35	UniRef90	UniRef90_A0A3E3ILY6	Phage major capsid protein	NA
UHGV-0133792_35	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0133792_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0133792_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0133792_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0133792_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0133792_36	UniRef90	UniRef90_A0A3R6NIS9	Phage gp6-like head-tail connector protein	NA
UHGV-0133792_36	eggNOG-mapper	1304866.K413DRAFT_1227	Phage gp6-like head-tail connector protein	NA
UHGV-0133792_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0133792_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0133792_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0133792_37	UniRef90	UniRef90_A0A416UBF8	Head-tail adaptor protein	NA
UHGV-0133792_37	eggNOG-mapper	1304866.K413DRAFT_1228	head-tail adaptor	NA
UHGV-0133792_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0133792_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0133792_37	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0133792_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0133792_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0133792_38	UniRef90	UniRef90_UPI0006C82A14	HK97 gp10 family phage protein	NA
UHGV-0133792_38	eggNOG-mapper	1304866.K413DRAFT_1229	NA	NA
UHGV-0133792_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0133792_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0133792_39	PHROG	phrog_78	tail terminator	connector
UHGV-0133792_39	eggNOG-mapper	1304866.K413DRAFT_1230	NA	NA
UHGV-0133792_39	Structural annotation	PF20765	NA	NA
UHGV-0133792_40	PHROG	phrog_88	major tail protein	tail
UHGV-0133792_40	UniRef90	UniRef90_UPI001921DE03	phage tail protein	NA
UHGV-0133792_40	eggNOG-mapper	1304866.K413DRAFT_1231	phage major tail protein, phi13 family	NA
UHGV-0133792_40	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0133792_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0133792_40	Structural annotation	PF06488, TIGR01603, COG3157	NA	NA
UHGV-0133792_42	PHROG	phrog_3033	NA	unknown function
UHGV-0133792_42	eggNOG-mapper	411473.RUMCAL_03186	NA	NA
UHGV-0133792_44	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0133792_44	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0133792_44	UniRef90	UniRef90_UPI001D085FA3	phage tail tape measure protein	NA
UHGV-0133792_44	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0133792_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0133792_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0133792_44	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0133792_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0133792_45	eggNOG-mapper	1278311.AUAL01000001_gene19	NA	NA
UHGV-0133792_45	Pfam	PF16774	Distal tail protein, N-terminal domain	Dit_N
UHGV-0133792_45	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0133792_46	PHROG	phrog_7064	tail protein	tail
UHGV-0133792_46	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0133792_47	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0133792_47	Structural annotation	PF20747	NA	NA
UHGV-0133792_48	PHROG	phrog_13589	NA	unknown function
UHGV-0133792_48	eggNOG-mapper	610130.Closa_0859	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0133792_48	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0133792_49	PHROG	phrog_16164	NA	unknown function
UHGV-0133792_49	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0133792_49	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0133792_50	PHROG	phrog_11541	NA	unknown function
UHGV-0133792_51	PHROG	phrog_18593	NA	unknown function
UHGV-0133792_51	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0133792_52	PHROG	phrog_4105	NA	unknown function
UHGV-0133792_52	eggNOG-mapper	1321782.HMPREF1986_02281	NA	NA
UHGV-0133792_53	PHROG	phrog_13256	NA	unknown function
UHGV-0133792_53	eggNOG-mapper	1160721.RBI_I01912	NA	NA