UHGV-0133896

Genome information

Genome length 33,760 bps

CDS count 51

Completeness 96.91% (high-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133896
vOTU ID	vOTU-008781
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_342344
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	4
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.49
Jumbo phage	No

Genome content
Genome length	33,760 bps
GC content	56.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.68%
Average CDS length	603.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133896_1	KOfam	K02510	hpaI, hpcH; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]	NA
UHGV-0133896_1	UniRef90	UniRef90_R5B8D9	HpcH_HpaI domain-containing protein	NA
UHGV-0133896_1	eggNOG-mapper	1121324.CLIT_10c01820	Belongs to the HpcH HpaI aldolase family	NA
UHGV-0133896_1	Pfam	PF03328	HpcH/HpaI aldolase/citrate lyase family	HpcH_HpaI
UHGV-0133896_1	COG	COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	NA
UHGV-0133896_3	Pfam	PF14106	NA	DUF4279
UHGV-0133896_4	KOfam	K20534	gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]	NA
UHGV-0133896_4	PHROG	phrog_841	GtrB-like O-antigen conversion	moron, auxiliary metabolic gene and host takeover
UHGV-0133896_4	UniRef90	UniRef90_R7GIU3	Glycosyltransferases involved in cell wall biogenesis	NA
UHGV-0133896_4	eggNOG-mapper	552398.HMPREF0866_00466	Glycosyltransferase like family 2	NA
UHGV-0133896_4	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0133896_5	KOfam	K20534	gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]	NA
UHGV-0133896_5	PHROG	phrog_841	GtrB-like O-antigen conversion	moron, auxiliary metabolic gene and host takeover
UHGV-0133896_5	UniRef90	UniRef90_R5AXH0	Glycosyltransferases involved in cell wall biogenesis	NA
UHGV-0133896_5	eggNOG-mapper	478749.BRYFOR_07487	PFAM Glycosyl transferase family 2	NA
UHGV-0133896_5	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0133896_5	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0133896_6	KOfam	K14059	int; integrase	NA
UHGV-0133896_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0133896_6	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0133896_6	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0133896_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0133896_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133896_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133896_6	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0133896_7	PHROG	phrog_5783	NA	unknown function
UHGV-0133896_7	UniRef90	UniRef90_A0A1C7FL48	Nuclease	NA
UHGV-0133896_7	eggNOG-mapper	445971.ANASTE_00686	NYN domain	NA
UHGV-0133896_7	Pfam	PF01936	NYN domain	NYN
UHGV-0133896_7	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0133896_7	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0133896_8	Structural annotation	PF21227	NA	NA
UHGV-0133896_9	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0133896_9	PHROG	phrog_19856	NA	unknown function
UHGV-0133896_9	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0133896_9	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0133896_9	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0133896_9	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0133896_10	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0133896_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0133896_10	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0133896_10	eggNOG-mapper	608538.HTH_1322	PBP superfamily domain	NA
UHGV-0133896_10	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0133896_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133896_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0133896_11	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-0133896_11	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0133896_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133896_15	PHROG	phrog_750	NA	unknown function
UHGV-0133896_15	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0133896_16	PHROG	phrog_585	NA	unknown function
UHGV-0133896_16	Pfam	PF10711	NA	DUF2513
UHGV-0133896_18	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0133896_18	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0133896_18	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0133896_18	eggNOG-mapper	1157490.EL26_11905	Antidote-toxin recognition MazE, bacterial antitoxin	NA
UHGV-0133896_18	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0133896_18	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0133896_18	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0133896_18	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0133896_21	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133896_21	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0133896_21	Structural annotation	PF21578	NA	NA
UHGV-0133896_22	KOfam	K03700	recU; recombination protein U	NA
UHGV-0133896_22	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133896_22	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0133896_22	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0133896_22	Pfam	PF03838	Recombination protein U	RecU
UHGV-0133896_22	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0133896_22	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0133896_23	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0133896_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0133896_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0133896_24	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0133896_24	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0133896_24	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0133896_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0133896_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133896_24	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0133896_25	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0133896_25	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0133896_25	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-0133896_25	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0133896_25	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0133896_25	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0133896_25	COG	COG0338	DNA-adenine methylase	NA
UHGV-0133896_25	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0133896_26	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0133896_26	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0133896_26	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0133896_27	PHROG	phrog_1029	NA	unknown function
UHGV-0133896_27	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0133896_27	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0133896_28	PHROG	phrog_5781	NA	unknown function
UHGV-0133896_28	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0133896_28	Pfam	PF14359	NA	DUF4406
UHGV-0133896_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0133896_28	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0133896_29	PHROG	phrog_3136	NA	unknown function
UHGV-0133896_29	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0133896_29	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0133896_29	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0133896_29	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0133896_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133896_30	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0133896_30	Pfam	PF07374	NA	DUF1492
UHGV-0133896_30	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0133896_31	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0133896_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133896_32	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0133896_32	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0133896_32	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0133896_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0133896_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0133896_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0133896_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133896_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133896_32	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0133896_33	PHROG	phrog_1233	NA	unknown function
UHGV-0133896_33	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0133896_33	Structural annotation	PF13058	NA	NA
UHGV-0133896_34	PHROG	phrog_533	portal protein	head and packaging
UHGV-0133896_34	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0133896_34	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0133896_34	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0133896_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0133896_35	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0133896_35	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0133896_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0133896_35	COG	COG2369	NA	NA
UHGV-0133896_35	Structural annotation	PF06152	NA	NA
UHGV-0133896_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0133896_36	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0133896_36	eggNOG-mapper	1125725.HMPREF1325_1331	Phage minor structural protein GP20	NA
UHGV-0133896_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0133896_36	Structural annotation	PF06810	NA	NA
UHGV-0133896_37	PHROG	phrog_267	major head protein	head and packaging
UHGV-0133896_37	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0133896_37	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133896_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0133896_38	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0133896_39	PHROG	phrog_3366	NA	unknown function
UHGV-0133896_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0133896_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0133896_40	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0133896_40	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0133896_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0133896_40	Structural annotation	PF11114	NA	NA
UHGV-0133896_41	PHROG	phrog_3266	tail completion	connector
UHGV-0133896_41	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0133896_41	Structural annotation	PF12691	NA	NA
UHGV-0133896_42	PHROG	phrog_3099	NA	unknown function
UHGV-0133896_42	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0133896_42	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0133896_43	PHROG	phrog_11299	NA	unknown function
UHGV-0133896_43	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0133896_43	Structural annotation	PF10666	NA	NA
UHGV-0133896_44	PHROG	phrog_706	NA	unknown function
UHGV-0133896_44	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0133896_44	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0133896_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0133896_44	Structural annotation	PF06854	NA	NA
UHGV-0133896_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0133896_45	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0133896_45	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0133896_45	COG	COG1511	NA	NA
UHGV-0133896_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0133896_47	PHROG	phrog_6616	tail protein	tail
UHGV-0133896_47	Structural annotation	PF13550, PF09931, NF033848, COG3500	NA	NA
UHGV-0133896_48	PHROG	phrog_15594	NA	unknown function
UHGV-0133896_48	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0133896_48	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0133896_49	PHROG	phrog_31538	NA	unknown function
UHGV-0133896_50	PHROG	phrog_13589	NA	unknown function
UHGV-0133896_50	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0133896_51	UniRef90	UniRef90_A0A7X4ZPD3	Histidine kinase	NA
UHGV-0133896_51	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA