UHGV-0133904

Genome information

Genome length 41,034 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133904
vOTU ID	vOTU-005429
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_342340
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.95
Jumbo phage	No

Genome content
Genome length	41,034 bps
GC content	44.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	92.47%
Average CDS length	580.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133904_1	PHROG	phrog_4433	NA	unknown function
UHGV-0133904_1	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0133904_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0133904_2	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133904_2	UniRef90	UniRef90_A0A3A6C308	Phage recombination protein Bet	NA
UHGV-0133904_2	eggNOG-mapper	536233.CLO_0507	Phage recombination protein Bet	NA
UHGV-0133904_2	Pfam	PF03837	RecT family	RecT
UHGV-0133904_2	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0133904_2	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0133904_2	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0133904_3	PHROG	phrog_674	NA	unknown function
UHGV-0133904_3	UniRef90	UniRef90_UPI00137A8C4D	NA	NA
UHGV-0133904_3	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0133904_3	Pfam	PF07083	NA	DUF1351
UHGV-0133904_3	Structural annotation	PF07083	NA	NA
UHGV-0133904_4	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133904_4	UniRef90	UniRef90_A0A416VA03	Recombinase	NA
UHGV-0133904_4	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0133904_4	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0133904_4	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0133904_4	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0133904_4	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0133904_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0133904_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0133904_9	UniRef90	UniRef90_A0A1C5MD88	Phage anti-repressor protein	NA
UHGV-0133904_9	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0133904_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0133904_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0133904_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0133904_9	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0133904_10	UniRef90	UniRef90_UPI001C01885A	DNA-binding protein	NA
UHGV-0133904_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0133904_13	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133904_13	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133904_13	UniRef90	UniRef90_A0A8H0V2C6	XRE family transcriptional regulator	NA
UHGV-0133904_13	eggNOG-mapper	755731.Clo1100_1415	DNA-binding helix-turn-helix protein	NA
UHGV-0133904_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133904_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133904_13	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0133904_14	PHROG	phrog_32721	NA	unknown function
UHGV-0133904_14	UniRef90	UniRef90_U2T9T6	Putative lipoprotein	NA
UHGV-0133904_14	eggNOG-mapper	1476973.JMMB01000007_gene2215	NA	NA
UHGV-0133904_14	Structural annotation	PF21223, TIGR04209	NA	NA
UHGV-0133904_16	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133904_16	UniRef90	UniRef90_A0A810PZN0	HTH cro/C1-type domain-containing protein	NA
UHGV-0133904_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133904_16	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0133904_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0133904_17	PHROG	phrog_95	integrase	integration and excision
UHGV-0133904_17	UniRef90	UniRef90_A0A1C6CR25	Recombinase	NA
UHGV-0133904_17	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0133904_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0133904_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-0133904_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0133904_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0133904_17	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0133904_18	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0133904_19	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133904_19	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0133904_20	PHROG	phrog_2329	NA	unknown function
UHGV-0133904_20	UniRef90	UniRef90_UPI001033A0F9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0133904_20	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0133904_20	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0133904_20	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0133904_23	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0133904_24	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0133904_24	Structural annotation	PF12510	NA	NA
UHGV-0133904_25	PHROG	phrog_20016	NA	unknown function
UHGV-0133904_25	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0133904_25	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0133904_25	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0133904_26	PHROG	phrog_16490	NA	unknown function
UHGV-0133904_26	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0133904_27	PHROG	phrog_22984	NA	unknown function
UHGV-0133904_28	PHROG	phrog_21718	NA	unknown function
UHGV-0133904_28	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0133904_28	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0133904_29	PHROG	phrog_3754	NA	unknown function
UHGV-0133904_29	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0133904_31	UniRef90	UniRef90_UPI001D091A6B	peptidoglycan-binding protein	NA
UHGV-0133904_31	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0133904_31	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0133904_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0133904_31	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0133904_31	Structural annotation	PF03412, PF01471, COG3271	NA	NA
UHGV-0133904_32	PHROG	phrog_443	holin	lysis
UHGV-0133904_32	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0133904_32	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0133904_32	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0133904_32	Structural annotation	PF16945	NA	NA
UHGV-0133904_33	PHROG	phrog_1863	NA	unknown function
UHGV-0133904_33	UniRef90	UniRef90_UPI001D0865D2	hemolysin XhlA family protein	NA
UHGV-0133904_33	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0133904_35	PHROG	phrog_1382	NA	unknown function
UHGV-0133904_35	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0133904_36	eggNOG-mapper	33035.JPJF01000043_gene999	NA	NA
UHGV-0133904_37	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0133904_37	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0133904_37	UniRef90	UniRef90_A0A374ILB9	Reverse transcriptase domain-containing protein	NA
UHGV-0133904_37	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0133904_37	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0133904_37	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0133904_37	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0133904_37	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0133904_38	PHROG	phrog_17147	NA	unknown function
UHGV-0133904_38	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0133904_38	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0133904_38	Structural annotation	PF16323	NA	NA
UHGV-0133904_39	Structural annotation	PF16990, NF033147, COG4935	NA	NA
UHGV-0133904_40	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0133904_41	PHROG	phrog_9994	NA	unknown function
UHGV-0133904_41	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0133904_41	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0133904_41	Structural annotation	PF20747, PF09458, NF012201	NA	NA
UHGV-0133904_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0133904_42	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0133904_42	eggNOG-mapper	665950.HMPREF1025_02520	NA	NA
UHGV-0133904_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0133904_42	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0133904_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0133904_43	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0133904_43	eggNOG-mapper	742723.HMPREF9477_00896	NA	NA
UHGV-0133904_43	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0133904_44	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0133904_44	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0133904_44	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0133904_44	COG	COG5412	Phage-related protein	NA
UHGV-0133904_44	Structural annotation	PF20155, COG5281	NA	NA
UHGV-0133904_46	PHROG	phrog_885	major tail protein	tail
UHGV-0133904_46	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0133904_46	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0133904_46	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0133904_47	PHROG	phrog_17405	head protein	head and packaging
UHGV-0133904_47	Structural annotation	PF11367	NA	NA
UHGV-0133904_48	PHROG	phrog_17977	NA	unknown function
UHGV-0133904_48	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0133904_48	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0133904_50	PHROG	phrog_544	major head protein	head and packaging
UHGV-0133904_50	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0133904_50	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0133904_50	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0133904_51	Structural annotation	PF06810	NA	NA
UHGV-0133904_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0133904_52	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0133904_52	eggNOG-mapper	268407.PWYN_03010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0133904_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0133904_53	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0133904_53	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0133904_53	eggNOG-mapper	460265.Mnod_7009	head morphogenesis protein SPP1 gp7	NA
UHGV-0133904_53	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0133904_53	COG	COG2369	NA	NA
UHGV-0133904_53	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0133904_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0133904_54	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0133904_54	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0133904_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133904_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0133904_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133904_55	PHROG	phrog_10250	NA	unknown function
UHGV-0133904_55	UniRef90	UniRef90_A0A352CU28	PBSX family phage terminase large subunit	NA
UHGV-0133904_55	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0133904_55	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133904_55	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133904_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133904_55	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133904_56	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0133904_56	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0133904_56	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0133904_56	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0133904_57	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0133904_57	Structural annotation	PF02001, TIGR01636	NA	NA
UHGV-0133904_59	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0133904_59	Structural annotation	PF02796, PF06257, COG2771, COG4466	NA	NA
UHGV-0133904_60	eggNOG-mapper	1235798.C817_05064	NA	NA
UHGV-0133904_60	Structural annotation	PF20063, TIGR01764	NA	NA
UHGV-0133904_61	PHROG	phrog_9804	NA	unknown function
UHGV-0133904_61	UniRef90	UniRef90_A0A174S716	Inhibitor_G39P domain-containing protein	NA
UHGV-0133904_61	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0133904_61	AcrCatalog	cluster_137185	NA	NA
UHGV-0133904_61	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0133904_61	Structural annotation	PF11417	NA	NA
UHGV-0133904_62	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0133904_62	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0133904_62	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0133904_62	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0133904_62	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0133904_62	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0133904_63	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133904_63	eggNOG-mapper	1280692.AUJL01000025_gene2095	NA	NA
UHGV-0133904_63	Structural annotation	PF01870, MF_01490, COG1591	NA	NA
UHGV-0133904_65	UniRef90	UniRef90_C7GC26	NA	NA
UHGV-0133904_65	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0133904_66	KOfam	K13884	MARCO; macrophage receptor with collagenous structure	NA
UHGV-0133904_66	PHROG	phrog_27197	NA	unknown function
UHGV-0133904_66	eggNOG-mapper	1287476.HMPREF1651_07170	DNA-templated transcription, initiation	NA
UHGV-0133904_66	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0133904_66	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0133904_66	Structural annotation	NF007410	NA	NA