UHGV-0133937

Genome information

Genome length 49,966 bps

CDS count 94

Completeness 84.77% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133937
vOTU ID	vOTU-018813
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_351126
BioSample	SAMN02333945
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.16
Jumbo phage	No

Genome content
Genome length	49,966 bps
GC content	37.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	94
CDS density	85.12%
Average CDS length	456.48 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133937_1	PHROG	phrog_6616	tail protein	tail
UHGV-0133937_1	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0133937_1	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0133937_1	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0133937_1	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0133937_2	PHROG	phrog_1419	tail protein	tail
UHGV-0133937_2	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0133937_4	PHROG	phrog_3845	NA	unknown function
UHGV-0133937_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133937_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133937_5	UniRef90	UniRef90_A0A412RR31	Helix-turn-helix domain-containing protein	NA
UHGV-0133937_5	eggNOG-mapper	1232449.BAHV02000016_gene1846	Peptidase S24-like	NA
UHGV-0133937_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133937_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0133937_5	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0133937_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133937_6	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0133937_6	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-0133937_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0133937_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0133937_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0133937_9	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0133937_9	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0133937_9	eggNOG-mapper	1449343.JQLQ01000002_gene1556	BRO family, N-terminal domain	NA
UHGV-0133937_9	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133937_9	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0133937_9	COG	COG3617	Prophage antirepressor	NA
UHGV-0133937_9	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0133937_11	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0133937_11	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0133937_14	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0133937_14	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133937_14	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0133937_14	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0133937_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0133937_14	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0133937_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0133937_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133937_16	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0133937_16	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0133937_16	Pfam	PF03837	RecT family	RecT
UHGV-0133937_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0133937_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0133937_16	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0133937_17	PHROG	phrog_25456	NA	unknown function
UHGV-0133937_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0133937_18	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0133937_18	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0133937_18	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0133937_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0133937_19	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0133937_19	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0133937_19	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0133937_19	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0133937_19	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0133937_20	PHROG	phrog_4400	NA	unknown function
UHGV-0133937_20	UniRef90	UniRef90_A8ATU1	Gp53	NA
UHGV-0133937_20	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0133937_20	dbAPIS	APIS056	NA	NA
UHGV-0133937_20	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0133937_22	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133937_22	UniRef90	UniRef90_A0A6M3IG98	Putative homing endonuclease	NA
UHGV-0133937_22	eggNOG-mapper	1444310.JANV01000162_gene1198	HNH endonuclease	NA
UHGV-0133937_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0133937_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0133937_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133937_23	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0133937_23	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0133937_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0133937_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0133937_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0133937_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0133937_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0133937_24	PHROG	phrog_19106	NA	unknown function
UHGV-0133937_24	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0133937_24	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0133937_24	Structural annotation	TIGR01453	NA	NA
UHGV-0133937_28	Structural annotation	PF17388	NA	NA
UHGV-0133937_29	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0133937_29	UniRef90	UniRef90_UPI001BB8B78A	Phage replication initiation protein	NA
UHGV-0133937_29	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0133937_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133937_29	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0133937_30	PHROG	phrog_9804	NA	unknown function
UHGV-0133937_30	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0133937_30	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0133937_30	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0133937_30	Structural annotation	PF11417	NA	NA
UHGV-0133937_34	PHROG	phrog_20593	NA	unknown function
UHGV-0133937_35	Structural annotation	PF19824	NA	NA
UHGV-0133937_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133937_38	PHROG	phrog_8684	NA	unknown function
UHGV-0133937_38	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0133937_38	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0133937_38	Pfam	PF09643	YopX protein	YopX
UHGV-0133937_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0133937_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0133937_39	PHROG	phrog_10714	NA	unknown function
UHGV-0133937_39	eggNOG-mapper	1120998.AUFC01000030_gene2222	NA	NA
UHGV-0133937_41	UniRef90	UniRef90_A0A413UEY2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0133937_41	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0133937_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0133937_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133937_42	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0133937_42	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0133937_42	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-0133937_42	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0133937_42	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0133937_42	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0133937_42	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133937_42	Structural annotation	PF00145	NA	NA
UHGV-0133937_44	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0133937_44	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0133937_44	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0133937_44	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0133937_44	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0133937_44	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0133937_44	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0133937_45	KOfam	K14059	int; integrase	NA
UHGV-0133937_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0133937_45	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0133937_45	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0133937_45	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0133937_45	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0133937_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133937_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133937_45	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0133937_47	PHROG	phrog_21718	NA	unknown function
UHGV-0133937_47	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0133937_47	Structural annotation	NF033819	NA	NA
UHGV-0133937_48	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0133937_49	PHROG	phrog_16490	NA	unknown function
UHGV-0133937_49	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0133937_50	UniRef90	UniRef90_R7B8I7	Ribbon-helix-helix protein CopG family	NA
UHGV-0133937_50	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0133937_50	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-0133937_50	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0133937_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0133937_52	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0133937_52	UniRef90	UniRef90_A0A416G2X7	AntA domain-containing protein	NA
UHGV-0133937_52	eggNOG-mapper	552396.HMPREF0863_00756	P22_AR N-terminal domain	NA
UHGV-0133937_52	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0133937_52	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0133937_52	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-0133937_53	PHROG	phrog_20016	NA	unknown function
UHGV-0133937_53	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0133937_53	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0133937_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0133937_54	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0133937_55	PHROG	phrog_1233	NA	unknown function
UHGV-0133937_55	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0133937_55	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0133937_55	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0133937_59	Structural annotation	PF20593	NA	NA
UHGV-0133937_60	eggNOG-mapper	908337.HMPREF9257_0254	NA	NA
UHGV-0133937_64	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0133937_64	Structural annotation	PF16677	NA	NA
UHGV-0133937_65	PHROG	phrog_236	nucleotide kinase	other
UHGV-0133937_65	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0133937_65	eggNOG-mapper	1123263.AUKY01000015_gene1590	NA	NA
UHGV-0133937_65	Pfam	PF11753	NA	DUF3310
UHGV-0133937_65	Structural annotation	PF11753	NA	NA
UHGV-0133937_67	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0133937_69	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133937_69	UniRef90	UniRef90_A0A8D9PGN5	HNH endonuclease	NA
UHGV-0133937_69	eggNOG-mapper	525378.HMPREF0793_1846	endonuclease activity	NA
UHGV-0133937_69	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0133937_69	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133937_69	Structural annotation	PF01844	NA	NA
UHGV-0133937_70	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0133937_70	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0133937_79	UniRef90	UniRef90_UPI0011072322	NA	NA
UHGV-0133937_79	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0133937_79	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0133937_80	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0133937_80	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0133937_80	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0133937_80	COG	COG5410	NA	NA
UHGV-0133937_80	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0133937_81	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133937_81	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0133937_81	Structural annotation	PF02996	NA	NA
UHGV-0133937_82	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0133937_83	PHROG	phrog_64	portal protein	head and packaging
UHGV-0133937_83	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0133937_83	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0133937_83	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133937_83	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0133937_84	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0133937_84	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0133937_84	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0133937_84	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0133937_85	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0133937_85	Structural annotation	PF14265	NA	NA
UHGV-0133937_86	PHROG	phrog_909	major head protein	head and packaging
UHGV-0133937_86	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0133937_87	PHROG	phrog_29	major head protein	head and packaging
UHGV-0133937_87	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0133937_87	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0133937_87	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0133937_87	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0133937_88	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0133937_88	Structural annotation	PF21169	NA	NA
UHGV-0133937_89	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0133937_90	PHROG	phrog_4105	NA	unknown function
UHGV-0133937_90	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0133937_91	PHROG	phrog_1129	holin	lysis
UHGV-0133937_91	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0133937_91	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0133937_91	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0133937_91	Structural annotation	PF06946	NA	NA
UHGV-0133937_92	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0133937_92	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0133937_93	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0133937_93	AcrCatalog	cluster_24841	NA	NA
UHGV-0133937_94	Structural annotation	PF05657	NA	NA