UHGV-0133960

Genome information

Genome length 38,733 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133960
vOTU ID	vOTU-070583
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366435
BioSample	SAMN03283256
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.55
Jumbo phage	No

Genome content
Genome length	38,733 bps
GC content	41.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	95.14%
Average CDS length	639.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133960_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0133960_1	UniRef90	UniRef90_UPI001D05BF46	helix-turn-helix domain-containing protein	NA
UHGV-0133960_1	eggNOG-mapper	1401067.HMPREF0872_03330	NA	NA
UHGV-0133960_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0133960_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0133960_2	PHROG	phrog_10797	NA	unknown function
UHGV-0133960_2	eggNOG-mapper	883156.HMPREF9282_01266	NA	NA
UHGV-0133960_2	Structural annotation	PF06531	NA	NA
UHGV-0133960_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133960_3	PHROG	phrog_435	endolysin	lysis
UHGV-0133960_3	UniRef90	UniRef90_A0A833CAF1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133960_3	eggNOG-mapper	546271.Selsp_1309	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133960_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0133960_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133960_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0133960_4	PHROG	phrog_27828	NA	unknown function
UHGV-0133960_4	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0133960_4	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0133960_7	UniRef90	UniRef90_R5BVD3	Tail fiber protein gpH	NA
UHGV-0133960_7	eggNOG-mapper	556268.OFAG_00371	Phage tail-collar fibre protein	NA
UHGV-0133960_7	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0133960_8	PHROG	phrog_4757	NA	unknown function
UHGV-0133960_8	UniRef90	UniRef90_R5BIW6	Phage capside-related protein	NA
UHGV-0133960_8	eggNOG-mapper	1121377.KB906398_gene1973	Phage portal protein, lambda family	NA
UHGV-0133960_8	COG	COG5511	Phage capsid protein	NA
UHGV-0133960_10	PHROG	phrog_1084	NA	unknown function
UHGV-0133960_10	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-0133960_11	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0133960_13	PHROG	phrog_1101	tail protein	tail
UHGV-0133960_13	UniRef90	UniRef90_UPI001D056283	phage tail protein	NA
UHGV-0133960_13	eggNOG-mapper	706434.HMPREF9429_00513	domain protein	NA
UHGV-0133960_13	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0133960_13	COG	COG1511	NA	NA
UHGV-0133960_13	Structural annotation	PF13550, PF05895, NF040662, TIGR03503, COG4733	NA	NA
UHGV-0133960_14	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0133960_14	PHROG	phrog_329	minor tail protein	tail
UHGV-0133960_14	UniRef90	UniRef90_R5BRP2	NlpC/P60 domain-containing protein	NA
UHGV-0133960_14	eggNOG-mapper	706434.HMPREF9429_00514	cysteine-type peptidase activity	NA
UHGV-0133960_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0133960_14	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0133960_15	PHROG	phrog_778	tail assembly protein	tail
UHGV-0133960_15	UniRef90	UniRef90_UPI000FD6930E	NA	NA
UHGV-0133960_15	eggNOG-mapper	706434.HMPREF9429_00515	NA	NA
UHGV-0133960_15	Pfam	PF09931	NA	DUF2163
UHGV-0133960_15	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0133960_15	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0133960_15	COG	COG5449	NA	NA
UHGV-0133960_15	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0133960_16	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0133960_16	UniRef90	UniRef90_X8H6S9	PF09343 family protein	NA
UHGV-0133960_16	eggNOG-mapper	706434.HMPREF9429_00516	NA	NA
UHGV-0133960_16	Pfam	PF09343	NA	DUF2460
UHGV-0133960_16	COG	COG5448	NA	NA
UHGV-0133960_16	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0133960_17	PHROG	phrog_12798	NA	unknown function
UHGV-0133960_17	UniRef90	UniRef90_UPI001D052E32	tape measure protein	NA
UHGV-0133960_17	eggNOG-mapper	706434.HMPREF9429_00517	tape measure	NA
UHGV-0133960_17	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0133960_17	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0133960_17	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0133960_17	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-0133960_18	PHROG	phrog_7377	NA	unknown function
UHGV-0133960_19	PHROG	phrog_2115	tail protein	tail
UHGV-0133960_19	eggNOG-mapper	1273103.NM10_06761	NA	NA
UHGV-0133960_19	Structural annotation	PF19591	NA	NA
UHGV-0133960_20	PHROG	phrog_1407	major tail protein	tail
UHGV-0133960_20	UniRef90	UniRef90_R5BIZ0	Phage major tail protein TP901-1 family	NA
UHGV-0133960_20	eggNOG-mapper	706434.HMPREF9429_00520	Phage tail tube protein	NA
UHGV-0133960_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0133960_20	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0133960_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0133960_21	PHROG	phrog_18864	NA	unknown function
UHGV-0133960_21	UniRef90	UniRef90_F5RMR0	Phosphoribosyl pyrophosphate synthetase	NA
UHGV-0133960_21	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0133960_22	PHROG	phrog_19017	NA	unknown function
UHGV-0133960_22	eggNOG-mapper	706434.HMPREF9429_00522	NA	NA
UHGV-0133960_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0133960_23	UniRef90	UniRef90_UPI000F8E0EA5	HK97 gp10 family phage protein	NA
UHGV-0133960_23	eggNOG-mapper	387092.NIS_0469	Phage virion morphogenesis	NA
UHGV-0133960_23	COG	COG5005	NA	NA
UHGV-0133960_23	Structural annotation	TIGR01725	NA	NA
UHGV-0133960_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-0133960_25	UniRef90	UniRef90_R5BRS0	Lj928 prophage protein	NA
UHGV-0133960_25	eggNOG-mapper	1123489.AUAN01000010_gene359	NA	NA
UHGV-0133960_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0133960_26	PHROG	phrog_206	head scaffolding protein	head and packaging
UHGV-0133960_26	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0133960_26	eggNOG-mapper	1123489.AUAN01000010_gene360	NA	NA
UHGV-0133960_26	Structural annotation	PF06810	NA	NA
UHGV-0133960_27	PHROG	phrog_1865	NA	unknown function
UHGV-0133960_28	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0133960_28	UniRef90	UniRef90_R5BIR3	Ntox50 domain-containing protein	NA
UHGV-0133960_28	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0133960_28	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0133960_28	Structural annotation	PF15542	NA	NA
UHGV-0133960_29	PHROG	phrog_145	portal protein	head and packaging
UHGV-0133960_29	UniRef90	UniRef90_F9MMJ7	Conserved domain protein	NA
UHGV-0133960_29	eggNOG-mapper	1123489.AUAN01000010_gene363	NA	NA
UHGV-0133960_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0133960_30	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0133960_30	UniRef90	UniRef90_A0A833FGT9	Phage terminase large subunit	NA
UHGV-0133960_30	eggNOG-mapper	1123489.AUAN01000010_gene364	TIGRFAM Phage	NA
UHGV-0133960_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133960_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0133960_30	COG	COG5410	NA	NA
UHGV-0133960_30	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0133960_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0133960_31	UniRef90	UniRef90_UPI001D046382	helix-turn-helix domain-containing protein	NA
UHGV-0133960_31	eggNOG-mapper	1123489.AUAN01000010_gene365	transposase activity	NA
UHGV-0133960_31	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0133960_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0133960_31	Structural annotation	PF07141	NA	NA
UHGV-0133960_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133960_32	UniRef90	UniRef90_A0A6N2ZMD2	Sigma-70, region 4	NA
UHGV-0133960_32	eggNOG-mapper	679201.HMPREF9334_00314	NA	NA
UHGV-0133960_32	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0133960_33	PHROG	phrog_6568	NA	unknown function
UHGV-0133960_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0133960_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0133960_35	UniRef90	UniRef90_A0A6N3AK63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0133960_35	eggNOG-mapper	1294142.CINTURNW_1015	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0133960_35	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0133960_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0133960_35	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0133960_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133960_35	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0133960_38	PHROG	phrog_21026	NA	unknown function
UHGV-0133960_39	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133960_39	UniRef90	UniRef90_A0A841R0Q1	Holliday junction resolvase	NA
UHGV-0133960_39	eggNOG-mapper	1123250.KB908417_gene653	NA	NA
UHGV-0133960_39	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0133960_40	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0133960_40	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0133960_40	UniRef90	UniRef90_A0A6N3AU65	Methyltransferase	NA
UHGV-0133960_40	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0133960_40	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0133960_40	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0133960_40	COG	COG0863	DNA modification methylase	NA
UHGV-0133960_40	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0133960_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0133960_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133960_41	UniRef90	UniRef90_UPI001D043C66	single-stranded DNA-binding protein	NA
UHGV-0133960_41	eggNOG-mapper	936589.HMPREF1521_1228	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0133960_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0133960_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0133960_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0133960_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0133960_41	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0133960_42	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0133960_42	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0133960_42	UniRef90	UniRef90_A0A6N3ANR8	AAA domain-containing protein	NA
UHGV-0133960_42	eggNOG-mapper	871968.DESME_09735	DNA-dependent DNA replication	NA
UHGV-0133960_42	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0133960_42	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0133960_42	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0133960_43	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0133960_43	UniRef90	UniRef90_R5BNX8	DnaD and phage-associated domain protein	NA
UHGV-0133960_43	eggNOG-mapper	706434.HMPREF9429_00772	NA	NA
UHGV-0133960_43	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0133960_43	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0133960_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133960_43	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0133960_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0133960_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133960_44	UniRef90	UniRef90_A0A6N3AQZ6	Recombination and repair protein RecT	NA
UHGV-0133960_44	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0133960_44	Pfam	PF03837	RecT family	RecT
UHGV-0133960_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0133960_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0133960_44	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0133960_45	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133960_45	UniRef90	UniRef90_R5BWZ6	Putative phage-type endonuclease subfamily	NA
UHGV-0133960_45	eggNOG-mapper	1120985.AUMI01000019_gene2252	YqaJ viral recombinase family protein	NA
UHGV-0133960_45	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0133960_45	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0133960_45	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0133960_45	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0133960_51	PHROG	phrog_6058	NA	unknown function
UHGV-0133960_51	UniRef90	UniRef90_A0A0J6ZJX1	HTH_17 domain-containing protein	NA
UHGV-0133960_51	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0133960_52	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133960_52	UniRef90	UniRef90_F2JNW6	NA	NA
UHGV-0133960_52	eggNOG-mapper	642492.Clole_0731	NA	NA
UHGV-0133960_52	Pfam	PF13643	NA	DUF4145
UHGV-0133960_52	Structural annotation	PF13643	NA	NA
UHGV-0133960_53	PHROG	phrog_14088	NA	unknown function
UHGV-0133960_53	UniRef90	UniRef90_A0A3E3DUP9	Carboxypeptidase	NA
UHGV-0133960_53	eggNOG-mapper	642492.Clole_1841	NA	NA
UHGV-0133960_54	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0133960_54	UniRef90	UniRef90_UPI001D044F3B	helix-turn-helix transcriptional regulator	NA
UHGV-0133960_54	eggNOG-mapper	936573.HMPREF1147_0113	Helix-turn-helix XRE-family like proteins	NA
UHGV-0133960_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133960_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133960_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0133960_55	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0133960_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0133960_55	UniRef90	UniRef90_A0A833CAG1	Helix-turn-helix domain-containing protein	NA
UHGV-0133960_55	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-0133960_55	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0133960_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133960_55	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0133960_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0133960_55	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0133960_56	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0133960_56	PHROG	phrog_3940	NA	unknown function
UHGV-0133960_56	UniRef90	UniRef90_UPI000F8E129E	AAA family ATPase	NA
UHGV-0133960_56	eggNOG-mapper	883156.HMPREF9282_01205	AAA ATPase domain	NA
UHGV-0133960_56	PADLOC	AAA_21	NA	NA
UHGV-0133960_56	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0133960_56	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0133960_56	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0133960_57	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0133960_57	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0133960_57	UniRef90	UniRef90_K9D1X9	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0133960_57	eggNOG-mapper	883156.HMPREF9282_01204	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0133960_57	PADLOC	MTase_II_00144	Type II methyltransferase	RM
UHGV-0133960_57	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0133960_57	COG	COG0338	DNA-adenine methylase	NA
UHGV-0133960_57	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA
UHGV-0133960_58	KOfam	K14059	int; integrase	NA
UHGV-0133960_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0133960_58	UniRef90	UniRef90_R5BZY1	Site-specific recombinase phage integrase family	NA
UHGV-0133960_58	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0133960_58	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0133960_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133960_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133960_58	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA