UHGV-0133964

Genome information

vOTU vOTU-020683

Genome length 39,359 bps

CDS count 70

Completeness 63.15% (medium-quality)

geNomad score 0.9705

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133964
vOTU ID	vOTU-020683
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_363899
BioSample	SAMN02711295
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	63.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9705
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.95
Jumbo phage	No

Genome content
Genome length	39,359 bps
GC content	29.55%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.48%
Average CDS length	499.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133964_1	KOfam	K14059	int; integrase	NA
UHGV-0133964_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0133964_1	UniRef90	UniRef90_R6DVW0	Phage integrase	NA
UHGV-0133964_1	eggNOG-mapper	857293.CAAU_0978	Belongs to the 'phage' integrase family	NA
UHGV-0133964_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133964_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133964_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0133964_2	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0133964_2	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0133964_2	UniRef90	UniRef90_R6YSE9	PemK-like protein	NA
UHGV-0133964_2	eggNOG-mapper	1273103.NM10_02422	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0133964_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0133964_2	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0133964_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0133964_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0133964_3	UniRef90	UniRef90_UPI00188A6E6E	XRE family transcriptional regulator	NA
UHGV-0133964_3	eggNOG-mapper	1403313.AXBR01000018_gene3552	Peptidase S24-like	NA
UHGV-0133964_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0133964_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133964_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0133964_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0133964_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0133964_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0133964_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133964_4	UniRef90	UniRef90_R7IUI2	DNA-binding helix-turn-helix protein	NA
UHGV-0133964_4	eggNOG-mapper	1121324.CLIT_8c01060	Helix-turn-helix XRE-family like proteins	NA
UHGV-0133964_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133964_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133964_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0133964_5	PHROG	phrog_4621	NA	unknown function
UHGV-0133964_5	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0133964_6	PHROG	phrog_3292	NA	unknown function
UHGV-0133964_6	UniRef90	UniRef90_UPI000DE379A1	KTSC domain-containing protein	NA
UHGV-0133964_6	eggNOG-mapper	1121342.AUCO01000012_gene1704	KTSC domain	NA
UHGV-0133964_6	Pfam	PF13619	KTSC domain	KTSC
UHGV-0133964_6	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0133964_6	Structural annotation	PF13619	NA	NA
UHGV-0133964_7	Structural annotation	PF07471, NF033787	NA	NA
UHGV-0133964_10	KOfam	K04769	spoVT; AbrB family transcriptional regulator, stage V sporulation protein T	NA
UHGV-0133964_10	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0133964_10	UniRef90	UniRef90_R6Y144	Transcriptional regulator AbrB family	NA
UHGV-0133964_10	eggNOG-mapper	1145276.T479_16390	Transition state regulator Abh	NA
UHGV-0133964_10	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0133964_10	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0133964_10	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0133964_10	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0133964_14	PHROG	phrog_862	NA	unknown function
UHGV-0133964_14	eggNOG-mapper	472175.EL18_02118	NA	NA
UHGV-0133964_14	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0133964_15	PHROG	phrog_1389	NA	unknown function
UHGV-0133964_15	eggNOG-mapper	1033737.CAEV01000076_gene535	NA	NA
UHGV-0133964_15	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0133964_16	PHROG	phrog_7566	NA	unknown function
UHGV-0133964_16	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0133964_17	PHROG	phrog_9327	primosomal protein	DNA, RNA and nucleotide metabolism
UHGV-0133964_17	UniRef90	UniRef90_A0A7C1NSM7	NA	NA
UHGV-0133964_17	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0133964_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133964_18	PHROG	phrog_9804	NA	unknown function
UHGV-0133964_18	UniRef90	UniRef90_A0A1I2QMA2	Loader and inhibitor of phage G40P	NA
UHGV-0133964_18	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0133964_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0133964_18	Structural annotation	PF11417	NA	NA
UHGV-0133964_19	PHROG	phrog_1123	NA	unknown function
UHGV-0133964_19	eggNOG-mapper	1560313.A0A0D3MSU0_9CAUD	NA	NA
UHGV-0133964_19	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0133964_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133964_20	UniRef90	UniRef90_A0A0F9IJL0	HNHc domain-containing protein (Fragment)	NA
UHGV-0133964_20	eggNOG-mapper	44056.XP_009041934.1	HNH endonuclease	NA
UHGV-0133964_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0133964_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0133964_21	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0133964_21	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0133964_21	UniRef90	UniRef90_A0A6M0L9L6	Methyltransferase	NA
UHGV-0133964_21	eggNOG-mapper	1449342.JQMR01000001_gene1025	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0133964_21	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0133964_21	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0133964_21	COG	COG0863	DNA modification methylase	NA
UHGV-0133964_21	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0133964_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0133964_22	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133964_22	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0133964_22	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0133964_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0133964_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0133964_25	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0133964_26	Pfam	PF04703	FaeA-like protein	FaeA
UHGV-0133964_26	Structural annotation	PF03444, MF_01586, NF011960, COG1846	NA	NA
UHGV-0133964_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133964_33	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0133964_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0133964_33	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-0133964_34	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133964_34	UniRef90	UniRef90_A0A2C5PXZ7	GIY-YIG domain-containing protein	NA
UHGV-0133964_34	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0133964_34	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0133964_34	Structural annotation	PF19835, PF07453, TIGR01453, COG2827	NA	NA
UHGV-0133964_37	PHROG	phrog_1233	NA	unknown function
UHGV-0133964_37	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0133964_37	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0133964_37	Structural annotation	PF13058	NA	NA
UHGV-0133964_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133964_39	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0133964_39	UniRef90	UniRef90_R6XV26	Phage terminase	NA
UHGV-0133964_39	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0133964_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0133964_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0133964_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133964_39	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0133964_40	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133964_40	UniRef90	UniRef90_UPI0004DA723D	HNH endonuclease	NA
UHGV-0133964_40	eggNOG-mapper	1141106.CAIB01000133_gene1117	HNH endonuclease	NA
UHGV-0133964_40	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0133964_40	Structural annotation	PF13392, PF10013, COG4068	NA	NA
UHGV-0133964_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0133964_41	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0133964_41	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0133964_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0133964_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0133964_43	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-0133964_43	eggNOG-mapper	1462526.BN990_03872	Phage minor capsid protein 2	NA
UHGV-0133964_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0133964_43	COG	COG2369	NA	NA
UHGV-0133964_43	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0133964_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0133964_46	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0133964_46	eggNOG-mapper	862517.HMPREF9225_1649	COG NOG36366 non supervised orthologous group	NA
UHGV-0133964_46	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0133964_46	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0133964_47	PHROG	phrog_544	major head protein	head and packaging
UHGV-0133964_47	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0133964_47	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0133964_47	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0133964_47	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133964_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0133964_48	eggNOG-mapper	411470.RUMGNA_02220	NA	NA
UHGV-0133964_49	PHROG	phrog_3366	NA	unknown function
UHGV-0133964_49	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0133964_49	Pfam	PF20536	NA	DUF6751
UHGV-0133964_49	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0133964_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0133964_50	UniRef90	UniRef90_A0A174E6U4	Minor capsid	NA
UHGV-0133964_50	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-0133964_50	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0133964_50	Structural annotation	PF11114	NA	NA
UHGV-0133964_51	PHROG	phrog_3266	tail completion	connector
UHGV-0133964_51	UniRef90	UniRef90_UPI001CF15A1F	chloramphenicol resistance protein	NA
UHGV-0133964_51	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0133964_51	Structural annotation	PF12691	NA	NA
UHGV-0133964_52	PHROG	phrog_3099	NA	unknown function
UHGV-0133964_52	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0133964_52	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0133964_53	UniRef90	UniRef90_A0A5C4RZ16	Zinc-ribbon domain and TM2 domain-containing protein	NA
UHGV-0133964_53	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0133964_54	UniRef90	UniRef90_A0A356AIQ0	RHH_1 domain-containing protein	NA
UHGV-0133964_54	eggNOG-mapper	1105031.HMPREF1141_1146	NA	NA
UHGV-0133964_54	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0133964_56	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0133964_56	UniRef90	UniRef90_R6H349	Bro-N domain-containing protein	NA
UHGV-0133964_56	eggNOG-mapper	1415774.U728_781	Phage antirepressor protein KilAC domain	NA
UHGV-0133964_56	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133964_56	COG	COG3617	Prophage antirepressor	NA
UHGV-0133964_57	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0133964_57	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0133964_57	UniRef90	UniRef90_R6HDY3	Bro-N domain-containing protein	NA
UHGV-0133964_57	eggNOG-mapper	1033733.CAEK01000007_gene1684	BRO family, N-terminal domain protein	NA
UHGV-0133964_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0133964_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0133964_57	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0133964_58	Structural annotation	PF10666	NA	NA
UHGV-0133964_59	PHROG	phrog_706	NA	unknown function
UHGV-0133964_59	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0133964_59	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0133964_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0133964_59	Structural annotation	PF06854	NA	NA
UHGV-0133964_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0133964_60	eggNOG-mapper	1123304.AQYA01000037_gene233	phage tail tape measure protein	NA
UHGV-0133964_60	COG	COG5412	Phage-related protein	NA
UHGV-0133964_60	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0133964_61	PHROG	phrog_1194	NA	unknown function
UHGV-0133964_61	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0133964_62	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0133964_62	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0133964_62	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0133964_62	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0133964_62	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0133964_63	Structural annotation	PF09343	NA	NA
UHGV-0133964_64	PHROG	phrog_5717	tail protein	tail
UHGV-0133964_64	UniRef90	UniRef90_A0A4U8Q6R4	Baseplate wedge subunit and tail pin	NA
UHGV-0133964_64	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0133964_64	COG	COG4675	Phage tail collar domain	NA
UHGV-0133964_64	Structural annotation	COG4675	NA	NA
UHGV-0133964_65	eggNOG-mapper	508419.F8J177_9CAUD	NA	NA
UHGV-0133964_66	PHROG	phrog_13256	NA	unknown function
UHGV-0133964_66	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0133964_67	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0133964_67	PHROG	phrog_35436	amidase	lysis
UHGV-0133964_67	UniRef90	UniRef90_UPI001C3866C0	peptidoglycan recognition protein family protein	NA
UHGV-0133964_67	eggNOG-mapper	748727.CLJU_c32580	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133964_67	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0133964_67	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0133964_67	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0133964_67	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA