UHGV-0133972

Genome information

Genome length 37,858 bps

CDS count 61

Completeness 99.27% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133972
vOTU ID	vOTU-075739
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365913
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.64
Jumbo phage	No

Genome content
Genome length	37,858 bps
GC content	46.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	93.18%
Average CDS length	581.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133972_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0133972_2	PHROG	phrog_435	endolysin	lysis
UHGV-0133972_2	UniRef90	UniRef90_A0A6N7X525	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133972_2	eggNOG-mapper	1392487.JIAD01000001_gene506	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133972_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0133972_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133972_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0133972_3	PHROG	phrog_1129	holin	lysis
UHGV-0133972_3	UniRef90	UniRef90_A0A2S0L5I2	Holin	NA
UHGV-0133972_3	eggNOG-mapper	702450.CUW_0551	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0133972_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0133972_3	Structural annotation	PF06946	NA	NA
UHGV-0133972_4	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0133972_6	Structural annotation	PF03422	NA	NA
UHGV-0133972_7	PHROG	phrog_9478	minor tail protein	tail
UHGV-0133972_7	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0133972_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0133972_7	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0133972_8	PHROG	phrog_5163	minor tail protein	tail
UHGV-0133972_8	UniRef90	UniRef90_A0A1C5RIA0	Phage-related protein	NA
UHGV-0133972_8	eggNOG-mapper	1158610.UC3_03184	Phage tail protein	NA
UHGV-0133972_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0133972_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0133972_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0133972_8	Structural annotation	PF05709, PF11614, TIGR01633, COG4722	NA	NA
UHGV-0133972_9	PHROG	phrog_1204	tail protein	tail
UHGV-0133972_9	UniRef90	UniRef90_A0A7Y8VRG3	Tape measure protein	NA
UHGV-0133972_9	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0133972_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0133972_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0133972_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0133972_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0133972_10	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0133972_10	UniRef90	UniRef90_F0YWR6	NA	NA
UHGV-0133972_10	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0133972_11	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0133972_11	UniRef90	UniRef90_UPI001EDE7A75	tail assembly chaperone	NA
UHGV-0133972_11	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0133972_11	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0133972_12	PHROG	phrog_238	major tail protein	tail
UHGV-0133972_12	UniRef90	UniRef90_A0A174PKY3	Phage major tail protein, TP901-1 family	NA
UHGV-0133972_12	eggNOG-mapper	476272.RUMHYD_02860	Phage tail tube protein	NA
UHGV-0133972_12	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0133972_12	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0133972_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0133972_13	PHROG	phrog_176	tail terminator	connector
UHGV-0133972_13	UniRef90	UniRef90_A0A3E3JYL5	NA	NA
UHGV-0133972_13	eggNOG-mapper	1235798.C817_03472	NA	NA
UHGV-0133972_13	Structural annotation	PF11367	NA	NA
UHGV-0133972_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0133972_14	UniRef90	UniRef90_A0A132P7U7	HK97 gp10 family phage protein	NA
UHGV-0133972_14	eggNOG-mapper	1232453.BAIF02000011_gene3362	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0133972_14	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0133972_14	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0133972_14	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0133972_15	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0133972_15	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0133972_15	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0133972_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0133972_16	UniRef90	UniRef90_A0A391NY33	Phage head-tail adapter protein	NA
UHGV-0133972_16	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0133972_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0133972_16	Structural annotation	PF05135	NA	NA
UHGV-0133972_17	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0133972_17	eggNOG-mapper	1145276.T479_19965	NA	NA
UHGV-0133972_18	PHROG	phrog_840	major head protein	head and packaging
UHGV-0133972_18	UniRef90	UniRef90_A0A352CVQ3	Phage capsid protein	NA
UHGV-0133972_18	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0133972_18	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0133972_19	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0133972_19	UniRef90	UniRef90_UPI0019607A58	NA	NA
UHGV-0133972_19	eggNOG-mapper	553184.ATORI0001_1003	NA	NA
UHGV-0133972_19	Pfam	PF14265	NA	DUF4355
UHGV-0133972_19	Structural annotation	PF14265	NA	NA
UHGV-0133972_20	UniRef90	UniRef90_R5LJS9	ATP-dependent Clp protease ATP-binding subunit ClpB	NA
UHGV-0133972_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0133972_21	UniRef90	UniRef90_UPI001D062328	minor capsid protein	NA
UHGV-0133972_21	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0133972_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0133972_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0133972_21	COG	COG2369	NA	NA
UHGV-0133972_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-0133972_22	UniRef90	UniRef90_A0A352CU27	Phage portal protein	NA
UHGV-0133972_22	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0133972_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0133972_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0133972_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0133972_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133972_23	PHROG	phrog_10250	NA	unknown function
UHGV-0133972_23	UniRef90	UniRef90_UPI00088B4057	PBSX family phage terminase large subunit	NA
UHGV-0133972_23	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0133972_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133972_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133972_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133972_23	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133972_24	PHROG	phrog_2412	NA	unknown function
UHGV-0133972_24	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0133972_24	eggNOG-mapper	556268.OFAG_00320	NA	NA
UHGV-0133972_26	Structural annotation	PF15887, COG4307	NA	NA
UHGV-0133972_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0133972_27	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0133972_27	UniRef90	UniRef90_UPI00066D34BE	NA	NA
UHGV-0133972_27	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-0133972_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0133972_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0133972_27	Pfam	PF14386	NA	DUF4417
UHGV-0133972_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0133972_27	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0133972_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133972_29	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0133972_29	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0133972_29	Structural annotation	PF04545, PF01920, MF_00674, TIGR01637, COG2739	NA	NA
UHGV-0133972_31	Structural annotation	PF10944	NA	NA
UHGV-0133972_33	PHROG	phrog_21026	NA	unknown function
UHGV-0133972_34	PHROG	phrog_21026	NA	unknown function
UHGV-0133972_35	eggNOG-mapper	1297617.JPJD01000031_gene1987	COG COG0175 3-phosphoadenosine 5-phosphosulfate sulfotransferase (PAPS reductase) FAD synthetase and related enzymes	NA
UHGV-0133972_35	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0133972_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0133972_37	UniRef90	UniRef90_A0A6N7XIA3	NA	NA
UHGV-0133972_37	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0133972_37	Pfam	PF06356	NA	DUF1064
UHGV-0133972_37	Structural annotation	PF06356	NA	NA
UHGV-0133972_38	PHROG	phrog_25754	NA	unknown function
UHGV-0133972_38	eggNOG-mapper	97139.C824_00736	NA	NA
UHGV-0133972_38	Structural annotation	PF18195, MF_01077, NF000936, COG4568	NA	NA
UHGV-0133972_39	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0133972_39	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0133972_39	UniRef90	UniRef90_A0A414SKC2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0133972_39	eggNOG-mapper	397291.C804_00969	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0133972_39	PADLOC	oMTase_00013	orphan methyltransferase	RM
UHGV-0133972_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0133972_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0133972_40	UniRef90	UniRef90_UPI0012923FF4	helix-turn-helix domain-containing protein	NA
UHGV-0133972_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133972_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133972_40	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0133972_41	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0133972_41	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0133972_41	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0133972_41	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0133972_41	Structural annotation	PF05565	NA	NA
UHGV-0133972_43	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0133972_43	UniRef90	UniRef90_I8RAX4	Phage replication initiation protein	NA
UHGV-0133972_43	eggNOG-mapper	1136177.KCA1_1070	DnaD domain protein	NA
UHGV-0133972_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0133972_43	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0133972_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0133972_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0133972_44	UniRef90	UniRef90_A0A6N7XL53	Single-stranded DNA-binding protein	NA
UHGV-0133972_44	eggNOG-mapper	936375.HMPREF1152_1764	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0133972_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0133972_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0133972_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0133972_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0133972_44	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0133972_45	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0133972_45	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0133972_45	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0133972_46	PHROG	phrog_7566	NA	unknown function
UHGV-0133972_46	UniRef90	UniRef90_UPI001C1E3E38	phosphoenolpyruvate carboxykinase	NA
UHGV-0133972_46	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0133972_47	PHROG	phrog_14970	NA	unknown function
UHGV-0133972_47	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0133972_47	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0133972_47	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0133972_47	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0133972_51	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0133972_51	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0133972_51	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0133972_51	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0133972_52	UniRef90	UniRef90_A0A6N3HMA5	Helix-turn-helix domain protein	NA
UHGV-0133972_52	eggNOG-mapper	718252.FP2_01130	NA	NA
UHGV-0133972_52	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0133972_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133972_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133972_53	UniRef90	UniRef90_UPI00135AEB63	helix-turn-helix domain-containing protein	NA
UHGV-0133972_53	eggNOG-mapper	697329.Rumal_3450	NA	NA
UHGV-0133972_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133972_53	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0133972_53	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0133972_54	KOfam	K14059	int; integrase	NA
UHGV-0133972_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0133972_54	UniRef90	UniRef90_A0A7Y9B158	Site-specific integrase	NA
UHGV-0133972_54	eggNOG-mapper	936375.HMPREF1152_0651	Belongs to the 'phage' integrase family	NA
UHGV-0133972_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0133972_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0133972_54	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0133972_55	UniRef90	UniRef90_R6GNZ5	DNA-binding helix-turn-helix protein	NA
UHGV-0133972_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133972_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133972_55	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0133972_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0133972_58	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0133972_59	PHROG	phrog_21718	NA	unknown function
UHGV-0133972_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0133972_60	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0133972_61	COG	COG5492	NA	NA
UHGV-0133972_61	Structural annotation	PF18341, NF040678, COG4991	NA	NA