UHGV-0133983

Genome information

Genome length 53,319 bps

CDS count 68

Completeness 98.58% (high-quality)

geNomad score 0.9740

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133983
vOTU ID	vOTU-059571
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365907
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.58% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9740
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.54
Jumbo phage	No

Genome content
Genome length	53,319 bps
GC content	48.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	92.94%
Average CDS length	732.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133983_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0133983_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0133983_1	UniRef90	UniRef90_A0A6L5T7Q4	Recombinase family protein	NA
UHGV-0133983_1	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-0133983_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0133983_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0133983_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0133983_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0133983_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0133983_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0133983_2	PHROG	phrog_13700	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0133983_2	UniRef90	UniRef90_UPI000F541C80	restriction endonuclease	NA
UHGV-0133983_2	eggNOG-mapper	689781.AUJX01000015_gene1540	restriction endonuclease	NA
UHGV-0133983_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0133983_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0133983_2	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0133983_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0133983_4	PHROG	phrog_87	metallo-protease	other
UHGV-0133983_4	UniRef90	UniRef90_UPI001C3AA0FC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0133983_4	eggNOG-mapper	428125.CLOLEP_02739	NA	NA
UHGV-0133983_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0133983_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0133983_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133983_5	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-0133983_5	eggNOG-mapper	663278.Ethha_2393	SMART helix-turn-helix domain protein	NA
UHGV-0133983_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133983_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0133983_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0133983_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0133983_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0133983_6	UniRef90	UniRef90_G4KQB4	Putative Xre family DNA-binding protein	NA
UHGV-0133983_6	eggNOG-mapper	693746.OBV_25500	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0133983_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133983_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0133983_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0133983_8	PHROG	phrog_18562	NA	unknown function
UHGV-0133983_8	eggNOG-mapper	1120746.CCNL01000014_gene2206	NA	NA
UHGV-0133983_9	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0133983_9	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133983_9	UniRef90	UniRef90_A0A7X5DXX3	NA	NA
UHGV-0133983_9	eggNOG-mapper	1203606.HMPREF1526_00234	NA	NA
UHGV-0133983_9	Pfam	PF10926	NA	DUF2800
UHGV-0133983_9	COG	COG2887	RecB family exonuclease	NA
UHGV-0133983_9	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0133983_11	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0133983_11	UniRef90	UniRef90_A0A3D5I946	NA	NA
UHGV-0133983_11	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0133983_11	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0133983_11	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0133983_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0133983_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0133983_15	UniRef90	UniRef90_H7BVQ1	POLAc domain-containing protein	NA
UHGV-0133983_15	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0133983_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0133983_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0133983_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0133983_16	PHROG	phrog_37900	NA	unknown function
UHGV-0133983_16	UniRef90	UniRef90_A0A1Q6L1N6	NA	NA
UHGV-0133983_16	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0133983_16	Pfam	PF19789	NA	DUF6273
UHGV-0133983_16	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0133983_16	Structural annotation	PF19789	NA	NA
UHGV-0133983_17	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0133983_17	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0133983_17	UniRef90	UniRef90_UPI0011069ADC	FAD-dependent thymidylate synthase	NA
UHGV-0133983_17	eggNOG-mapper	720554.Clocl_3035	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0133983_17	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0133983_17	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0133983_17	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0133983_17	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0133983_20	eggNOG-mapper	1203606.HMPREF1526_00240	NA	NA
UHGV-0133983_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0133983_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0133983_21	UniRef90	UniRef90_C9LP80	Helicase C-terminal domain protein	NA
UHGV-0133983_21	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0133983_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0133983_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0133983_21	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0133983_22	KOfam	K24451	zim; modification methylase	NA
UHGV-0133983_22	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0133983_22	UniRef90	UniRef90_A0A374BT14	Methyltransferase	NA
UHGV-0133983_22	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0133983_22	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0133983_22	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0133983_22	COG	COG0863	DNA modification methylase	NA
UHGV-0133983_22	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0133983_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0133983_23	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0133983_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0133983_23	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0133983_24	eggNOG-mapper	1176422.I6R1G5_9CAUD	NA	NA
UHGV-0133983_25	PHROG	phrog_1233	NA	unknown function
UHGV-0133983_25	UniRef90	UniRef90_A0A3F2ZWJ6	NA	NA
UHGV-0133983_25	eggNOG-mapper	476272.RUMHYD_02850	NA	NA
UHGV-0133983_25	Structural annotation	PF06114	NA	NA
UHGV-0133983_27	PHROG	phrog_4019	NA	unknown function
UHGV-0133983_28	PHROG	phrog_6568	NA	unknown function
UHGV-0133983_28	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0133983_29	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0133983_29	eggNOG-mapper	1232446.BAIE02000011_gene1613	NA	NA
UHGV-0133983_30	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0133983_30	UniRef90	UniRef90_A0A3D5I927	Virulence-associated protein E	NA
UHGV-0133983_30	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0133983_30	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0133983_30	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0133983_30	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0133983_31	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133983_31	UniRef90	UniRef90_A0A6L5T7N7	VRR-NUC domain-containing protein	NA
UHGV-0133983_31	eggNOG-mapper	1262449.CP6013_3186	VRR-NUC domain-containing protein	NA
UHGV-0133983_31	Structural annotation	PF08774, MF_01490, NF040854, COG1591	NA	NA
UHGV-0133983_32	KOfam	K20093	ERCC6L, PICH; DNA excision repair protein ERCC-6-like [EC:5.6.2.-]	NA
UHGV-0133983_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0133983_32	UniRef90	UniRef90_A0A6L5T7C5	ATP-dependent helicase	NA
UHGV-0133983_32	eggNOG-mapper	1203606.HMPREF1526_00244	snf2 family	NA
UHGV-0133983_32	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0133983_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0133983_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0133983_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0133983_32	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0133983_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0133983_33	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0133983_33	eggNOG-mapper	1235835.C814_01174	NA	NA
UHGV-0133983_34	PHROG	phrog_8680	NA	unknown function
UHGV-0133983_34	UniRef90	UniRef90_A0A373MX42	NA	NA
UHGV-0133983_34	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0133983_34	Pfam	PF14386	NA	DUF4417
UHGV-0133983_34	Structural annotation	PF14386	NA	NA
UHGV-0133983_35	PHROG	phrog_9479	NA	unknown function
UHGV-0133983_35	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0133983_35	Structural annotation	PF15529	NA	NA
UHGV-0133983_36	PHROG	phrog_5057	NA	unknown function
UHGV-0133983_37	PHROG	phrog_2412	NA	unknown function
UHGV-0133983_37	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0133983_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0133983_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0133983_38	UniRef90	UniRef90_A0A1H7MRC6	Phage terminase, large subunit, PBSX family	NA
UHGV-0133983_38	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0133983_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0133983_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0133983_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0133983_38	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0133983_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0133983_39	UniRef90	UniRef90_A0A1H7MQM5	Phage portal protein, putative, A118 family	NA
UHGV-0133983_39	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0133983_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0133983_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0133983_40	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0133983_40	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0133983_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0133983_40	COG	COG2369	NA	NA
UHGV-0133983_40	Structural annotation	PF06152	NA	NA
UHGV-0133983_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0133983_41	UniRef90	UniRef90_A0A1H7MPG5	Phage minor structural protein GP20	NA
UHGV-0133983_41	eggNOG-mapper	1235790.C805_00072	Phage minor structural protein GP20	NA
UHGV-0133983_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0133983_41	Structural annotation	PF06810	NA	NA
UHGV-0133983_42	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0133983_42	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0133983_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0133983_44	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0133983_45	PHROG	phrog_3366	NA	unknown function
UHGV-0133983_45	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0133983_45	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0133983_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0133983_46	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0133983_46	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0133983_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0133983_46	Structural annotation	PF11114	NA	NA
UHGV-0133983_47	PHROG	phrog_3266	tail completion	connector
UHGV-0133983_47	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0133983_47	Structural annotation	PF12691	NA	NA
UHGV-0133983_48	PHROG	phrog_3099	NA	unknown function
UHGV-0133983_48	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0133983_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0133983_49	PHROG	phrog_11299	NA	unknown function
UHGV-0133983_49	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0133983_50	PHROG	phrog_706	NA	unknown function
UHGV-0133983_50	UniRef90	UniRef90_A0A1H7MNA7	Bacteriophage Gp15 protein	NA
UHGV-0133983_50	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0133983_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0133983_50	Structural annotation	PF06854	NA	NA
UHGV-0133983_51	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0133983_51	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0133983_51	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0133983_51	COG	COG5283	Phage-related tail protein	NA
UHGV-0133983_52	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0133983_53	PHROG	phrog_32308	NA	unknown function
UHGV-0133983_53	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0133983_55	PHROG	phrog_240	head protein	head and packaging
UHGV-0133983_55	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0133983_55	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0133983_58	PHROG	phrog_37900	NA	unknown function
UHGV-0133983_58	UniRef90	UniRef90_UPI001D072CA6	NA	NA
UHGV-0133983_58	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0133983_58	Pfam	PF19789	NA	DUF6273
UHGV-0133983_58	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0133983_59	PHROG	phrog_30516	NA	unknown function
UHGV-0133983_59	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0133983_60	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0133983_60	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0133983_60	UniRef90	UniRef90_A0A3D5EUG8	Reverse transcriptase domain-containing protein	NA
UHGV-0133983_60	eggNOG-mapper	1410650.JHWL01000003_gene2820	Reverse transcriptase	NA
UHGV-0133983_60	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0133983_60	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0133983_60	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0133983_60	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0133983_61	UniRef90	UniRef90_A0A3A8W9C3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0133983_61	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0133983_62	PHROG	phrog_20388	endolysin	lysis
UHGV-0133983_62	UniRef90	UniRef90_A0A3A9CYR4	CHAP domain-containing protein	NA
UHGV-0133983_62	eggNOG-mapper	411483.FAEPRAA2165_01927	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133983_62	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0133983_62	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0133983_63	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0133983_65	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0133983_65	UniRef90	UniRef90_A0A2A7B941	Bro-N domain-containing protein	NA
UHGV-0133983_65	eggNOG-mapper	411471.SUBVAR_04440	BRO family, N-terminal domain	NA
UHGV-0133983_65	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0133983_65	COG	COG3617	Prophage antirepressor	NA
UHGV-0133983_65	Structural annotation	PF02498, PF13560, NF041951, COG3617, COG3655	NA	NA