UHGV-0133995

Genome information

Genome length 35,660 bps

CDS count 45

Completeness 56.67% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0133995
vOTU ID	vOTU-032980
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_360980
BioSample	SAMN02675046
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.21
Jumbo phage	No

Genome content
Genome length	35,660 bps
GC content	55.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	88.95%
Average CDS length	707.60 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0133995_1	PHROG	phrog_19265	NA	unknown function
UHGV-0133995_1	UniRef90	UniRef90_UPI001F378BD9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133995_1	eggNOG-mapper	1435051.BMOU_0757	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0133995_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0133995_1	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0133995_2	PHROG	phrog_263	holin	lysis
UHGV-0133995_2	UniRef90	UniRef90_E0Q7A8	Putative holin, SPP1 family	NA
UHGV-0133995_2	eggNOG-mapper	566552.BIFCAT_00852	SPP1 phage holin	NA
UHGV-0133995_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0133995_3	PHROG	phrog_1397	NA	unknown function
UHGV-0133995_3	UniRef90	UniRef90_A0A6N2T369	PRTRC system protein E	NA
UHGV-0133995_3	eggNOG-mapper	1435051.BMOU_0761	NA	NA
UHGV-0133995_4	eggNOG-mapper	566552.BIFCAT_00857	NA	NA
UHGV-0133995_5	PHROG	phrog_36485	NA	unknown function
UHGV-0133995_5	UniRef90	UniRef90_W4NAJ4	Leucine-rich repeat (LRR) protein	NA
UHGV-0133995_5	eggNOG-mapper	1435051.BMOU_0763	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0133995_5	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0133995_5	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0133995_5	Structural annotation	PF05895	NA	NA
UHGV-0133995_6	PHROG	phrog_1885	minor tail protein	tail
UHGV-0133995_6	eggNOG-mapper	1437603.BMON_0125	NA	NA
UHGV-0133995_7	PHROG	phrog_1885	minor tail protein	tail
UHGV-0133995_7	UniRef90	UniRef90_A0A087B699	Putative major tail protein	NA
UHGV-0133995_7	eggNOG-mapper	35760.BCHO_0828	NA	NA
UHGV-0133995_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0133995_8	PHROG	phrog_3398	virion structural protein	head and packaging
UHGV-0133995_8	eggNOG-mapper	1437605.BACT_1064	NA	NA
UHGV-0133995_8	Structural annotation	PF05475, NF033147, COG4935	NA	NA
UHGV-0133995_9	PHROG	phrog_5577	minor tail protein	tail
UHGV-0133995_9	UniRef90	UniRef90_W4N9I3	Phage tail domain protein	NA
UHGV-0133995_9	eggNOG-mapper	566552.BIFCAT_00861	NA	NA
UHGV-0133995_9	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0133995_10	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0133995_10	UniRef90	UniRef90_A0A1X2Z117	Tail length tape measure protein	NA
UHGV-0133995_10	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0133995_10	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0133995_12	PHROG	phrog_36579	NA	unknown function
UHGV-0133995_13	PHROG	phrog_117	major tail protein	tail
UHGV-0133995_13	UniRef90	UniRef90_A0A1D7UNT0	Phage coat protein	NA
UHGV-0133995_13	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-0133995_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0133995_14	Structural annotation	PF12691	NA	NA
UHGV-0133995_15	PHROG	phrog_32608	NA	unknown function
UHGV-0133995_15	Structural annotation	PF17395	NA	NA
UHGV-0133995_16	PHROG	phrog_25853	NA	unknown function
UHGV-0133995_16	UniRef90	UniRef90_A0A1X2Z7Z3	Thiamine biosynthesis protein ThiS	NA
UHGV-0133995_16	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-0133995_16	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0133995_17	PHROG	phrog_36776	NA	unknown function
UHGV-0133995_17	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0133995_18	PHROG	phrog_29	major head protein	head and packaging
UHGV-0133995_18	UniRef90	UniRef90_A0A2N0T1R7	Major capsid protein E	NA
UHGV-0133995_18	eggNOG-mapper	35760.BCHO_0839	Phage major capsid protein E	NA
UHGV-0133995_18	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0133995_18	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0133995_19	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0133995_19	UniRef90	UniRef90_A0A261GA15	K structural protein	NA
UHGV-0133995_19	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0133995_19	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0133995_19	Structural annotation	PF02924	NA	NA
UHGV-0133995_20	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-0133995_21	PHROG	phrog_36668	NA	unknown function
UHGV-0133995_21	UniRef90	UniRef90_W6EWN9	NA	NA
UHGV-0133995_21	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0133995_21	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0133995_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0133995_22	UniRef90	UniRef90_A0A5M9ZHZ0	Phage portal protein	NA
UHGV-0133995_22	eggNOG-mapper	1688.BCUN_1874	NA	NA
UHGV-0133995_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0133995_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0133995_23	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0133995_23	eggNOG-mapper	35760.BCHO_0844	Terminase	NA
UHGV-0133995_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0133995_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0133995_24	PHROG	phrog_226	minor tail protein	tail
UHGV-0133995_24	eggNOG-mapper	566461.SSFG_01019	NA	NA
UHGV-0133995_25	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0133995_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0133995_26	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0133995_26	UniRef90	UniRef90_E0Q7D2	HNH endonuclease domain protein	NA
UHGV-0133995_26	eggNOG-mapper	35760.BCHO_0845	HNH endonuclease	NA
UHGV-0133995_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0133995_27	UniRef90	UniRef90_E0Q7D3	DNA-binding helix-turn-helix protein	NA
UHGV-0133995_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0133995_36	eggNOG-mapper	1435051.BMOU_1230	NA	NA
UHGV-0133995_39	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0133995_39	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0133995_39	UniRef90	UniRef90_E0Q7E2	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0133995_39	eggNOG-mapper	1304888.ATWF01000001_gene726	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0133995_39	Pfam	PF00692	dUTPase	dUTPase
UHGV-0133995_39	NCBIFam	NF001862.0	dUTP diphosphatase	NA
UHGV-0133995_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0133995_39	HAMAP	MF_00116	Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]	NA
UHGV-0133995_39	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0133995_40	PHROG	phrog_16160	NA	unknown function
UHGV-0133995_40	eggNOG-mapper	479431.Namu_0337	NA	NA
UHGV-0133995_40	Pfam	PF20223	NA	DUF6582
UHGV-0133995_42	PHROG	phrog_908	NA	unknown function
UHGV-0133995_42	eggNOG-mapper	1692.BMAGN_1534	NA	NA
UHGV-0133995_42	Structural annotation	TIGR02043	NA	NA
UHGV-0133995_43	UniRef90	UniRef90_UPI0018C32F08	permease	NA
UHGV-0133995_44	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0133995_44	UniRef90	UniRef90_A0A2K9BIS6	DNA methyltransferase	NA
UHGV-0133995_44	eggNOG-mapper	1384484.AEQU_0050	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0133995_44	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0133995_44	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0133995_44	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA