UHGV-0134087

Genome information

Genome length 40,945 bps

CDS count 58

Completeness 72.87% (medium-quality)

geNomad score 0.9656

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134087
vOTU ID	vOTU-042466
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375704
BioSample	SAMN06051246
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9656
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.1
Jumbo phage	No

Genome content
Genome length	40,945 bps
GC content	30.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.44%
Average CDS length	641.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134087_1	eggNOG-mapper	1280692.AUJL01000005_gene1708	NA	NA
UHGV-0134087_1	Structural annotation	PF08948, MF_01537, TIGR03711	NA	NA
UHGV-0134087_2	KOfam	K14059	int; integrase	NA
UHGV-0134087_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0134087_2	UniRef90	UniRef90_A0A1I2JED3	Phage integrase family protein	NA
UHGV-0134087_2	eggNOG-mapper	1280692.AUJL01000005_gene1707	Belongs to the 'phage' integrase family	NA
UHGV-0134087_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0134087_3	PHROG	phrog_5156	NA	unknown function
UHGV-0134087_3	UniRef90	UniRef90_A0A1C6H0N7	Type IV conjugative transfer system coupling protein TraD	NA
UHGV-0134087_3	eggNOG-mapper	1211817.CCAT010000049_gene2453	COG0433 Predicted ATPase	NA
UHGV-0134087_3	Pfam	PF10412	Type IV secretion-system coupling protein DNA-binding domain	TrwB_AAD_bind
UHGV-0134087_3	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0134087_3	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-0134087_4	eggNOG-mapper	1415774.U728_688	NA	NA
UHGV-0134087_4	AcrCatalog	cluster_137178	NA	NA
UHGV-0134087_5	UniRef90	UniRef90_A5I485	Putative membrane protein	NA
UHGV-0134087_5	eggNOG-mapper	536232.CLM_2490	NA	NA
UHGV-0134087_7	PHROG	phrog_4223	NA	unknown function
UHGV-0134087_8	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0134087_8	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0134087_8	UniRef90	UniRef90_A0A316M7E8	ALP_N domain-containing protein	NA
UHGV-0134087_8	eggNOG-mapper	1415774.U728_798	StbA protein	NA
UHGV-0134087_8	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0134087_8	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-0134087_8	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0134087_8	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0134087_11	eggNOG-mapper	1151292.QEW_4408	NA	NA
UHGV-0134087_12	eggNOG-mapper	63737.Npun_DF032	NA	NA
UHGV-0134087_14	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0134087_14	PHROG	phrog_670	endolysin	lysis
UHGV-0134087_14	UniRef90	UniRef90_UPI00145980E3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0134087_14	eggNOG-mapper	1280692.AUJL01000002_gene2569	PFAM NLP P60 protein	NA
UHGV-0134087_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0134087_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0134087_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0134087_14	Structural annotation	PF01510, PF01471, MF_04111, NF008758, TIGR02869, COG5632, COG3409	NA	NA
UHGV-0134087_15	PHROG	phrog_199	holin	lysis
UHGV-0134087_15	UniRef90	UniRef90_UPI0014013480	phage holin family protein	NA
UHGV-0134087_15	eggNOG-mapper	536233.CLO_1583	toxin secretion phage lysis holin	NA
UHGV-0134087_15	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0134087_15	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0134087_15	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0134087_18	KOfam	K18353	vanJ; vancomycin resistance protein VanJ	NA
UHGV-0134087_18	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0134087_18	eggNOG-mapper	536233.CLO_0899	NA	NA
UHGV-0134087_18	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0134087_18	Pfam	PF03372	Endonuclease/Exonuclease/phosphatase family	Exo_endo_phos
UHGV-0134087_19	PHROG	phrog_6130	NA	unknown function
UHGV-0134087_19	eggNOG-mapper	1347392.CCEZ01000005_gene1247	NA	NA
UHGV-0134087_20	PHROG	phrog_7043	tail protein	tail
UHGV-0134087_20	UniRef90	UniRef90_D9SVZ6	Phage minor structural protein	NA
UHGV-0134087_20	eggNOG-mapper	573061.Clocel_3531	Phage minor structural protein	NA
UHGV-0134087_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0134087_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0134087_20	COG	COG4926	Phage-related protein	NA
UHGV-0134087_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0134087_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0134087_21	UniRef90	UniRef90_A0A1C6KY20	Phage-related protein	NA
UHGV-0134087_21	eggNOG-mapper	1499683.CCFF01000005_gene79	tail component	NA
UHGV-0134087_21	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0134087_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0134087_21	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0134087_22	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0134087_22	UniRef90	UniRef90_A0A316M2G4	Phage tail tape measure protein	NA
UHGV-0134087_22	eggNOG-mapper	1443125.Z962_p0064	phage tail tape measure protein	NA
UHGV-0134087_22	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0134087_22	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0134087_22	COG	COG1340	NA	NA
UHGV-0134087_22	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0134087_23	PHROG	phrog_6780	NA	unknown function
UHGV-0134087_23	UniRef90	UniRef90_A0A316M3F7	NA	NA
UHGV-0134087_23	eggNOG-mapper	1265845.PWEIH_11590	NA	NA
UHGV-0134087_23	Pfam	PF13273	NA	DUF4064
UHGV-0134087_24	PHROG	phrog_6280	NA	unknown function
UHGV-0134087_24	UniRef90	UniRef90_UPI001AA892DF	esterase	NA
UHGV-0134087_24	eggNOG-mapper	1443125.Z962_p0061	NA	NA
UHGV-0134087_25	PHROG	phrog_6686	tail tube protein	tail
UHGV-0134087_25	UniRef90	UniRef90_A0A1H0N6N2	Intein N-terminal splicing region	NA
UHGV-0134087_25	eggNOG-mapper	59241.E7DNB3_BPDP1	NA	NA
UHGV-0134087_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0134087_26	PHROG	phrog_7585	NA	unknown function
UHGV-0134087_26	eggNOG-mapper	1121342.AUCO01000012_gene1689	NA	NA
UHGV-0134087_26	Structural annotation	PF05657	NA	NA
UHGV-0134087_27	UniRef90	UniRef90_UPI001E31310C	HK97 gp10 family phage protein	NA
UHGV-0134087_27	eggNOG-mapper	1443125.Z962_p0058	NA	NA
UHGV-0134087_27	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0134087_28	PHROG	phrog_38382	NA	unknown function
UHGV-0134087_29	PHROG	phrog_4020	NA	unknown function
UHGV-0134087_29	eggNOG-mapper	1345695.CLSA_c35540	NA	NA
UHGV-0134087_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0134087_30	UniRef90	UniRef90_A0A316M099	Phage capsid protein	NA
UHGV-0134087_30	eggNOG-mapper	1345695.CLSA_c35550	Phage major capsid protein E	NA
UHGV-0134087_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0134087_30	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0134087_31	PHROG	phrog_909	major head protein	head and packaging
UHGV-0134087_31	eggNOG-mapper	536233.CLO_1842	NA	NA
UHGV-0134087_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0134087_32	UniRef90	UniRef90_A0A316M2H1	Phage capsid protein	NA
UHGV-0134087_32	eggNOG-mapper	536232.CLM_2525	Phage minor structural protein GP20	NA
UHGV-0134087_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0134087_32	Structural annotation	PF06810	NA	NA
UHGV-0134087_34	PHROG	phrog_1233	NA	unknown function
UHGV-0134087_34	UniRef90	UniRef90_B2TNX0	NA	NA
UHGV-0134087_34	eggNOG-mapper	1280692.AUJL01000004_gene849	NA	NA
UHGV-0134087_37	PHROG	phrog_1315	NA	unknown function
UHGV-0134087_38	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0134087_38	UniRef90	UniRef90_A0A4U9RAJ3	Exonuclease SbcC	NA
UHGV-0134087_38	eggNOG-mapper	1443125.Z962_p0047	NA	NA
UHGV-0134087_38	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0134087_38	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0134087_39	PHROG	phrog_64	portal protein	head and packaging
UHGV-0134087_39	UniRef90	UniRef90_UPI001EEB60D4	phage portal protein	NA
UHGV-0134087_39	eggNOG-mapper	431943.CKL_3279	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0134087_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0134087_39	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0134087_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134087_40	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0134087_40	UniRef90	UniRef90_A0A316M3W0	PBSX family phage terminase large subunit	NA
UHGV-0134087_40	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-0134087_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0134087_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0134087_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0134087_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134087_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0134087_41	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0134087_41	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0134087_41	UniRef90	UniRef90_A0A316M0A8	Phage portal protein	NA
UHGV-0134087_41	eggNOG-mapper	545697.HMPREF0216_02842	Phage terminase, large subunit, PBSX family	NA
UHGV-0134087_41	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0134087_41	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0134087_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134087_41	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0134087_42	eggNOG-mapper	1196322.A370_05723	NA	NA
UHGV-0134087_43	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0134087_43	UniRef90	UniRef90_UPI001E41E4B5	transcriptional regulator	NA
UHGV-0134087_43	eggNOG-mapper	1443125.Z962_p0040	NA	NA
UHGV-0134087_43	Structural annotation	PF08281, MF_00245, NF001068, COG2739	NA	NA
UHGV-0134087_44	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0134087_46	eggNOG-mapper	1196322.A370_02064	NA	NA
UHGV-0134087_50	UniRef90	UniRef90_A0A316M112	Glutamate racemase	NA
UHGV-0134087_51	UniRef90	UniRef90_A0A127EFP7	SCP domain-containing protein	NA
UHGV-0134087_51	Pfam	PF00188	Cysteine-rich secretory protein family	CAP
UHGV-0134087_54	PHROG	phrog_421	NA	unknown function
UHGV-0134087_54	UniRef90	UniRef90_A0A316M917	NA	NA
UHGV-0134087_54	eggNOG-mapper	1280689.AUJC01000013_gene1748	NA	NA
UHGV-0134087_54	Pfam	PF10979	NA	DUF2786
UHGV-0134087_54	COG	COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	NA
UHGV-0134087_56	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0134087_56	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0134087_56	UniRef90	UniRef90_A0A316M9X2	mRNA interferase	NA
UHGV-0134087_56	eggNOG-mapper	332101.JIBU02000003_gene4445	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0134087_56	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0134087_56	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0134087_56	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0134087_58	PHROG	phrog_9628	NA	unknown function
UHGV-0134087_58	UniRef90	UniRef90_A0A316MRG1	HTH_11 domain-containing protein	NA
UHGV-0134087_58	eggNOG-mapper	1280689.AUJC01000013_gene1753	NA	NA
UHGV-0134087_58	Pfam	PF08279	HTH domain	HTH_11
UHGV-0134087_58	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA