UHGV-0134139

Genome information

Genome length 34,676 bps

CDS count 47

Completeness 86.78% (medium-quality)

geNomad score 0.9718

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134139
vOTU ID	vOTU-009108
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_378616
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.78% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9718
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.92
Jumbo phage	No

Genome content
Genome length	34,676 bps
GC content	46.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.36%
Average CDS length	687.19 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134139_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0134139_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0134139_1	UniRef90	UniRef90_R6Y0X3	Resolvase protein	NA
UHGV-0134139_1	eggNOG-mapper	1235835.C814_01150	NA	NA
UHGV-0134139_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0134139_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0134139_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0134139_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0134139_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0134139_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0134139_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0134139_2	UniRef90	UniRef90_R6X770	DNA polymerase III epsilon subunit	NA
UHGV-0134139_2	eggNOG-mapper	1064535.MELS_0544	DNA polymerase III	NA
UHGV-0134139_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0134139_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0134139_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0134139_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134139_4	UniRef90	UniRef90_UPI000F0C6FCE	helix-turn-helix transcriptional regulator	NA
UHGV-0134139_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134139_4	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0134139_5	UniRef90	UniRef90_UPI000F0CCAE6	XRE family transcriptional regulator	NA
UHGV-0134139_5	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0134139_14	COG	COG1388	LysM repeat	NA
UHGV-0134139_14	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0134139_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0134139_18	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0134139_18	UniRef90	UniRef90_A0A1Y4WCX6	ParB domain-containing protein	NA
UHGV-0134139_18	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0134139_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0134139_18	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0134139_18	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0134139_18	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0134139_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134139_19	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0134139_19	Structural annotation	PF21578	NA	NA
UHGV-0134139_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0134139_20	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0134139_20	UniRef90	UniRef90_A0A3C1IQM4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0134139_20	eggNOG-mapper	401526.TcarDRAFT_1308	Endodeoxyribonuclease RusA	NA
UHGV-0134139_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0134139_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0134139_20	Structural annotation	PF05866, MF_00107, NF007305, COG4570	NA	NA
UHGV-0134139_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134139_22	UniRef90	UniRef90_A0A1P8Q5L7	HNH endonuclease	NA
UHGV-0134139_22	eggNOG-mapper	1443122.Z958_05960	HNH nucleases	NA
UHGV-0134139_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0134139_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0134139_23	PHROG	phrog_1066	NA	unknown function
UHGV-0134139_23	eggNOG-mapper	1382358.JHVN01000024_gene1703	NA	NA
UHGV-0134139_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0134139_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0134139_24	UniRef90	UniRef90_A0A174PIP2	Phage terminase-like protein, large subunit	NA
UHGV-0134139_24	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0134139_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0134139_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0134139_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0134139_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0134139_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0134139_25	UniRef90	UniRef90_UPI001CFCE6F1	phage portal protein	NA
UHGV-0134139_25	eggNOG-mapper	1443122.Z958_05975	Portal protein	NA
UHGV-0134139_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0134139_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0134139_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0134139_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0134139_26	KOfam	K06904	NA	NA
UHGV-0134139_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0134139_26	UniRef90	UniRef90_UPI00195CEA1A	HK97 family phage prohead protease	NA
UHGV-0134139_26	eggNOG-mapper	1203606.HMPREF1526_01338	Caudovirus prohead serine protease	NA
UHGV-0134139_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0134139_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0134139_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0134139_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0134139_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0134139_27	UniRef90	UniRef90_UPI0009954CA8	phage major capsid protein	NA
UHGV-0134139_27	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0134139_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0134139_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0134139_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0134139_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134139_28	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0134139_28	UniRef90	UniRef90_A0A7Y2L7T0	Phage gp6-like head-tail connector protein	NA
UHGV-0134139_28	eggNOG-mapper	706434.HMPREF9429_00761	Phage gp6-like head-tail connector protein	NA
UHGV-0134139_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0134139_28	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0134139_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0134139_29	PHROG	phrog_25	head closure Hc1	connector
UHGV-0134139_29	eggNOG-mapper	568816.Acin_1914	Phage head-tail joining protein	NA
UHGV-0134139_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0134139_29	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0134139_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0134139_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0134139_30	UniRef90	UniRef90_A0A7X7UAB5	HK97 gp10 family phage protein	NA
UHGV-0134139_30	eggNOG-mapper	568816.Acin_1913	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0134139_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0134139_30	COG	COG5005	NA	NA
UHGV-0134139_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0134139_31	PHROG	phrog_176	tail terminator	connector
UHGV-0134139_31	UniRef90	UniRef90_UPI000E4BB0CC	NA	NA
UHGV-0134139_31	eggNOG-mapper	457415.HMPREF1006_00470	NA	NA
UHGV-0134139_31	Pfam	PF11367	NA	DUF3168
UHGV-0134139_31	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0134139_32	PHROG	phrog_1407	major tail protein	tail
UHGV-0134139_32	UniRef90	UniRef90_R6X5G0	Phage major tail protein TP901-1 family	NA
UHGV-0134139_32	eggNOG-mapper	568816.Acin_1911	Phage tail tube protein	NA
UHGV-0134139_32	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0134139_32	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0134139_32	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0134139_33	PHROG	phrog_2115	tail protein	tail
UHGV-0134139_33	eggNOG-mapper	568816.Acin_1910	NA	NA
UHGV-0134139_33	Structural annotation	PF19591	NA	NA
UHGV-0134139_35	PHROG	phrog_12798	NA	unknown function
UHGV-0134139_35	UniRef90	UniRef90_A0A3A5R8M9	TMP_3 domain-containing protein	NA
UHGV-0134139_35	eggNOG-mapper	568816.Acin_1908	tape measure	NA
UHGV-0134139_35	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0134139_35	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0134139_35	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0134139_36	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0134139_36	UniRef90	UniRef90_C9LPA8	TIGR02217 family protein	NA
UHGV-0134139_36	eggNOG-mapper	592028.GCWU000321_01387	NA	NA
UHGV-0134139_36	Pfam	PF09343	NA	DUF2460
UHGV-0134139_36	COG	COG5448	NA	NA
UHGV-0134139_36	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0134139_37	PHROG	phrog_778	tail assembly protein	tail
UHGV-0134139_37	UniRef90	UniRef90_R6AUE0	Conserved domain protein	NA
UHGV-0134139_37	eggNOG-mapper	592028.GCWU000321_01388	NA	NA
UHGV-0134139_37	Pfam	PF09931	NA	DUF2163
UHGV-0134139_37	COG	COG5449	NA	NA
UHGV-0134139_37	Structural annotation	PF09931, TIGR01600, COG4672	NA	NA
UHGV-0134139_38	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0134139_38	PHROG	phrog_329	minor tail protein	tail
UHGV-0134139_38	UniRef90	UniRef90_C9LPB0	NlpC/P60 family protein	NA
UHGV-0134139_38	eggNOG-mapper	592028.GCWU000321_01389	NlpC/P60 family	NA
UHGV-0134139_38	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0134139_38	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0134139_38	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0134139_39	PHROG	phrog_1101	tail protein	tail
UHGV-0134139_39	UniRef90	UniRef90_R6AN79	Conserved domain protein	NA
UHGV-0134139_39	eggNOG-mapper	592028.GCWU000321_01390	Putative phage tail protein	NA
UHGV-0134139_39	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0134139_39	COG	COG1511	NA	NA
UHGV-0134139_39	Structural annotation	PF13550, PF16323, NF040662, NF010681, COG4733	NA	NA
UHGV-0134139_40	PHROG	phrog_2427	NA	unknown function
UHGV-0134139_41	PHROG	phrog_4062	NA	unknown function
UHGV-0134139_42	PHROG	phrog_33356	NA	unknown function
UHGV-0134139_42	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0134139_44	PHROG	phrog_2837	tail protein	tail
UHGV-0134139_44	UniRef90	UniRef90_A0A3C1IQ26	NA	NA
UHGV-0134139_44	eggNOG-mapper	466088.CL42_06175	NA	NA
UHGV-0134139_44	Pfam	PF14301	NA	DUF4376
UHGV-0134139_44	Structural annotation	PF14301	NA	NA
UHGV-0134139_45	UniRef90	UniRef90_UPI001EDD344B	phage holin family protein	NA
UHGV-0134139_45	eggNOG-mapper	936573.HMPREF1147_1740	Bacteriophage holin family	NA
UHGV-0134139_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0134139_45	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0134139_46	KOfam	K07273	acm; lysozyme	NA
UHGV-0134139_46	PHROG	phrog_291	endolysin	lysis
UHGV-0134139_46	UniRef90	UniRef90_A0A316S7T0	Glycosyl hydrolase family 25	NA
UHGV-0134139_46	eggNOG-mapper	910314.HMPREF9220_0603	Glycosyl hydrolases family 25	NA
UHGV-0134139_46	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0134139_46	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0134139_46	Structural annotation	PF01183, NF008377, COG3757	NA	NA