UHGV-0134245

Genome information

Genome length 43,886 bps

CDS count 75

Completeness 73.37% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134245
vOTU ID	vOTU-039112
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367560
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.61
Jumbo phage	No

Genome content
Genome length	43,886 bps
GC content	39.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	82.78%
Average CDS length	485.92 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134245_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0134245_6	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0134245_6	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0134245_8	PHROG	phrog_8684	NA	unknown function
UHGV-0134245_8	UniRef90	UniRef90_A0A412RQU3	YopX domain-containing protein	NA
UHGV-0134245_8	eggNOG-mapper	1497679.EP56_02820	YopX protein	NA
UHGV-0134245_8	Pfam	PF09643	YopX protein	YopX
UHGV-0134245_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0134245_9	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0134245_9	UniRef90	UniRef90_UPI001BC561E1	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0134245_9	eggNOG-mapper	665956.HMPREF1032_00660	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0134245_9	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0134245_9	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0134245_9	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0134245_11	PHROG	phrog_9804	NA	unknown function
UHGV-0134245_11	UniRef90	UniRef90_A0A416G2U5	Inhibitor_G39P domain-containing protein	NA
UHGV-0134245_11	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0134245_11	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0134245_11	Structural annotation	PF11417	NA	NA
UHGV-0134245_13	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0134245_13	eggNOG-mapper	172045.KS04_04560	helix_turn_helix, Lux Regulon	NA
UHGV-0134245_13	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0134245_13	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0134245_13	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0134245_14	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0134245_14	PHROG	phrog_95	integrase	integration and excision
UHGV-0134245_14	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0134245_14	eggNOG-mapper	1408437.JNJN01000023_gene2128	NA	NA
UHGV-0134245_14	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0134245_14	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0134245_14	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0134245_14	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0134245_16	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0134245_16	Structural annotation	NF033819	NA	NA
UHGV-0134245_17	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0134245_18	PHROG	phrog_16490	NA	unknown function
UHGV-0134245_18	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0134245_19	PHROG	phrog_20016	NA	unknown function
UHGV-0134245_19	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0134245_19	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0134245_19	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0134245_20	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0134245_21	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-0134245_21	eggNOG-mapper	445971.ANASTE_00673	NA	NA
UHGV-0134245_21	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0134245_24	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0134245_24	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0134245_24	eggNOG-mapper	478749.BRYFOR_07645	Phage regulatory protein	NA
UHGV-0134245_24	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0134245_24	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0134245_24	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0134245_24	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0134245_25	PHROG	phrog_1233	NA	unknown function
UHGV-0134245_25	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0134245_25	Structural annotation	PF13058	NA	NA
UHGV-0134245_33	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0134245_33	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0134245_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134245_33	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0134245_35	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0134245_37	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0134245_37	UniRef90	UniRef90_R6C0D1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0134245_37	eggNOG-mapper	665956.HMPREF1032_00660	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0134245_37	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0134245_37	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0134245_37	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0134245_40	Structural annotation	PF18895, NF009256	NA	NA
UHGV-0134245_42	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0134245_45	PHROG	phrog_25639	NA	unknown function
UHGV-0134245_45	eggNOG-mapper	397290.C810_01381	NA	NA
UHGV-0134245_46	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0134245_46	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0134245_46	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0134245_46	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0134245_46	COG	COG5410	NA	NA
UHGV-0134245_46	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0134245_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0134245_47	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0134245_47	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-0134245_47	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0134245_47	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0134245_48	PHROG	phrog_64	portal protein	head and packaging
UHGV-0134245_48	UniRef90	UniRef90_A0A3R6ASF4	Phage portal protein	NA
UHGV-0134245_48	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0134245_48	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0134245_48	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0134245_49	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0134245_50	PHROG	phrog_909	major head protein	head and packaging
UHGV-0134245_50	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0134245_50	eggNOG-mapper	268407.PWYN_15680	NA	NA
UHGV-0134245_51	PHROG	phrog_29	major head protein	head and packaging
UHGV-0134245_51	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0134245_51	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0134245_51	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0134245_51	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0134245_52	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0134245_52	Structural annotation	PF21169	NA	NA
UHGV-0134245_53	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0134245_53	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0134245_54	PHROG	phrog_1863	NA	unknown function
UHGV-0134245_54	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0134245_55	PHROG	phrog_18218	NA	unknown function
UHGV-0134245_55	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0134245_55	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0134245_56	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0134245_56	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0134245_57	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0134245_57	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0134245_57	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0134245_58	PHROG	phrog_419	NA	unknown function
UHGV-0134245_58	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-0134245_58	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-0134245_58	Structural annotation	PF14083	NA	NA
UHGV-0134245_59	Structural annotation	PF05657	NA	NA
UHGV-0134245_60	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0134245_60	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0134245_63	PHROG	phrog_14030	NA	unknown function
UHGV-0134245_63	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0134245_63	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0134245_63	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0134245_63	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0134245_63	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0134245_64	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0134245_64	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0134245_64	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0134245_65	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0134245_65	Pfam	PF11611	NA	DUF4352
UHGV-0134245_65	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0134245_66	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0134245_66	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0134245_66	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0134245_66	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0134245_67	PHROG	phrog_1194	NA	unknown function
UHGV-0134245_67	eggNOG-mapper	483218.BACPEC_01144	NA	NA
UHGV-0134245_67	Pfam	PF20458	NA	DUF6711
UHGV-0134245_67	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0134245_68	PHROG	phrog_18190	NA	unknown function
UHGV-0134245_68	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0134245_68	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0134245_68	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0134245_68	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0134245_70	PHROG	phrog_17196	kinase	other
UHGV-0134245_70	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0134245_70	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0134245_72	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134245_72	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134245_72	UniRef90	UniRef90_UPI001C02DC6D	helix-turn-helix transcriptional regulator	NA
UHGV-0134245_72	eggNOG-mapper	1304866.K413DRAFT_3003	addiction module antidote protein HigA	NA
UHGV-0134245_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134245_72	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0134245_72	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0134245_73	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134245_73	UniRef90	UniRef90_UPI001C012A29	helix-turn-helix domain-containing protein	NA
UHGV-0134245_73	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0134245_73	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134245_73	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0134245_73	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0134245_75	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0134245_75	PHROG	phrog_6904	NA	unknown function
UHGV-0134245_75	UniRef90	UniRef90_R6LR90	AntA domain-containing protein	NA
UHGV-0134245_75	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0134245_75	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0134245_75	COG	COG3561	Phage anti-repressor protein Ant	NA