UHGV-0134327

Genome information

Genome length 33,356 bps

CDS count 52

Completeness 82.53% (medium-quality)

geNomad score 0.9739

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134327
vOTU ID	vOTU-028950
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_382873
BioSample	SAMN04209219
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9739
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	75.32
Jumbo phage	No

Genome content
Genome length	33,356 bps
GC content	37.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	90.95%
Average CDS length	587.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134327_1	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0134327_2	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0134327_4	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0134327_4	UniRef90	UniRef90_UPI001EDFD86A	phage tail protein	NA
UHGV-0134327_4	eggNOG-mapper	476272.RUMHYD_02865	NA	NA
UHGV-0134327_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0134327_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0134327_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0134327_5	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0134327_5	UniRef90	UniRef90_UPI001EE13C6C	phage tail family protein	NA
UHGV-0134327_5	eggNOG-mapper	476272.RUMHYD_02864	NA	NA
UHGV-0134327_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0134327_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0134327_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0134327_5	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0134327_6	PHROG	phrog_1204	tail protein	tail
UHGV-0134327_6	UniRef90	UniRef90_UPI001EDDAD50	tape measure protein	NA
UHGV-0134327_6	eggNOG-mapper	1302286.BAOT01000008_gene610	phage tail tape measure protein	NA
UHGV-0134327_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0134327_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0134327_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0134327_7	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0134327_7	UniRef90	UniRef90_A0A1C5RIQ9	NA	NA
UHGV-0134327_7	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0134327_7	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0134327_7	Structural annotation	PF12363	NA	NA
UHGV-0134327_8	PHROG	phrog_238	major tail protein	tail
UHGV-0134327_8	UniRef90	UniRef90_A0A374APJ8	Phage major tail protein, TP901-1 family	NA
UHGV-0134327_8	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0134327_8	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0134327_8	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0134327_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0134327_9	PHROG	phrog_176	tail terminator	connector
UHGV-0134327_9	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0134327_9	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0134327_9	Structural annotation	PF11367	NA	NA
UHGV-0134327_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0134327_10	UniRef90	UniRef90_UPI001E5A2719	HK97 gp10 family phage protein	NA
UHGV-0134327_10	eggNOG-mapper	1123315.AUIP01000003_gene248	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0134327_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0134327_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0134327_10	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0134327_11	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0134327_11	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0134327_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0134327_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0134327_12	UniRef90	UniRef90_A0A173ZES1	Phage gp6-like head-tail connector protein	NA
UHGV-0134327_12	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0134327_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0134327_12	Structural annotation	PF05135	NA	NA
UHGV-0134327_13	PHROG	phrog_3673	Arc-like repressor	transcription regulation
UHGV-0134327_13	UniRef90	UniRef90_UPI00085C94B8	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0134327_13	eggNOG-mapper	1497679.EP56_05735	NA	NA
UHGV-0134327_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0134327_14	UniRef90	UniRef90_R9N796	HK97 family phage major capsid protein	NA
UHGV-0134327_14	eggNOG-mapper	1235798.C817_03476	COG NOG20168 non supervised orthologous group	NA
UHGV-0134327_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0134327_14	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0134327_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0134327_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0134327_14	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134327_15	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0134327_15	UniRef90	UniRef90_UPI001D083D1C	NA	NA
UHGV-0134327_15	eggNOG-mapper	1235798.C817_03477	NA	NA
UHGV-0134327_15	Pfam	PF14265	NA	DUF4355
UHGV-0134327_15	Structural annotation	PF14265	NA	NA
UHGV-0134327_16	KOfam	K07584	NA	NA
UHGV-0134327_16	PHROG	phrog_4478	peptidase	other
UHGV-0134327_16	UniRef90	UniRef90_UPI00156DEF22	ribosomal-processing cysteine protease Prp	NA
UHGV-0134327_16	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0134327_16	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0134327_16	COG	COG2868	NA	NA
UHGV-0134327_16	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0134327_17	PHROG	phrog_918	NA	unknown function
UHGV-0134327_17	UniRef90	UniRef90_UPI001D092FF5	NA	NA
UHGV-0134327_17	eggNOG-mapper	1256908.HMPREF0373_00480	NA	NA
UHGV-0134327_17	Pfam	PF19791	NA	DUF6275
UHGV-0134327_17	Structural annotation	PF19791	NA	NA
UHGV-0134327_18	PHROG	phrog_872	NA	unknown function
UHGV-0134327_18	eggNOG-mapper	411902.CLOBOL_06322	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0134327_18	dbAPIS	APIS052	NA	NA
UHGV-0134327_20	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0134327_20	UniRef90	UniRef90_A0A1Q9JPY4	Phage_Mu_F domain-containing protein	NA
UHGV-0134327_20	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0134327_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0134327_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0134327_20	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0134327_20	COG	COG2369	NA	NA
UHGV-0134327_20	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0134327_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0134327_21	UniRef90	UniRef90_A0A1Y4VKB2	Phage portal protein	NA
UHGV-0134327_21	eggNOG-mapper	1235798.C817_03481	Phage portal protein, SPP1 family	NA
UHGV-0134327_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0134327_21	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0134327_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0134327_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134327_22	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0134327_22	UniRef90	UniRef90_R9N6N1	PBSX family phage terminase, large subunit	NA
UHGV-0134327_22	eggNOG-mapper	1235798.C817_03482	Terminase-like family	NA
UHGV-0134327_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0134327_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0134327_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0134327_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134327_22	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0134327_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0134327_23	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0134327_23	UniRef90	UniRef90_UPI0011823C89	terminase small subunit	NA
UHGV-0134327_23	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0134327_23	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0134327_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0134327_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134327_23	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0134327_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0134327_24	UniRef90	UniRef90_A0A7X4ZQ48	RNA polymerase subunit sigma-70	NA
UHGV-0134327_24	eggNOG-mapper	411902.CLOBOL_05672	NA	NA
UHGV-0134327_24	Structural annotation	PF02996	NA	NA
UHGV-0134327_25	PHROG	phrog_6568	NA	unknown function
UHGV-0134327_26	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0134327_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0134327_29	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0134327_29	UniRef90	UniRef90_A0A373BKT8	Bro-N domain-containing protein	NA
UHGV-0134327_29	eggNOG-mapper	1122146.AUHP01000010_gene1045	BRO family, N-terminal domain	NA
UHGV-0134327_29	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0134327_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0134327_29	COG	COG3617	Prophage antirepressor	NA
UHGV-0134327_29	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0134327_30	PHROG	phrog_7566	NA	unknown function
UHGV-0134327_30	eggNOG-mapper	1235792.C808_03078	NA	NA
UHGV-0134327_33	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0134327_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0134327_33	UniRef90	UniRef90_A0A174KC84	Ribonuclease H	NA
UHGV-0134327_33	eggNOG-mapper	2340.JV46_20980	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0134327_33	Pfam	PF00075	RNase H	RNase_H
UHGV-0134327_33	COG	COG0328	Ribonuclease HI	NA
UHGV-0134327_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0134327_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134327_34	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-0134327_34	Structural annotation	PF01446	NA	NA
UHGV-0134327_41	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0134327_41	UniRef90	UniRef90_A0A415G6V9	NA	NA
UHGV-0134327_41	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0134327_41	Structural annotation	COG2250	NA	NA
UHGV-0134327_42	PHROG	phrog_14088	NA	unknown function
UHGV-0134327_42	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0134327_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134327_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134327_45	UniRef90	UniRef90_UPI001BC85B83	helix-turn-helix domain-containing protein	NA
UHGV-0134327_45	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0134327_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134327_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134327_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0134327_48	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0134327_48	UniRef90	UniRef90_A0A1V0QEI2	Transcriptional regulator	NA
UHGV-0134327_48	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0134327_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134327_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0134327_50	UniRef90	UniRef90_A0A366U359	LysM domain	NA
UHGV-0134327_50	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0134327_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0134327_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0134327_51	UniRef90	UniRef90_U2RFE5	Resolvase protein	NA
UHGV-0134327_51	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0134327_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0134327_51	Pfam	PF07508	Recombinase	Recombinase
UHGV-0134327_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0134327_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0134327_51	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0134327_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0134327_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0134327_52	UniRef90	UniRef90_A0A0V8QI90	Recombinase domain-containing protein	NA
UHGV-0134327_52	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0134327_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0134327_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0134327_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0134327_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0134327_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA