UHGV-0134352

Genome information

Genome length 35,213 bps

CDS count 56

Completeness 75.04% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134352
vOTU ID	vOTU-015881
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370863
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	78.12
Jumbo phage	No

Genome content
Genome length	35,213 bps
GC content	35.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.82%
Average CDS length	574.93 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134352_1	KOfam	K14059	int; integrase	NA
UHGV-0134352_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0134352_1	UniRef90	UniRef90_Q830D2	Site-specific recombinase, phage integrase family	NA
UHGV-0134352_1	eggNOG-mapper	1201292.DR75_1547	Belongs to the 'phage' integrase family	NA
UHGV-0134352_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0134352_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0134352_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134352_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0134352_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0134352_2	PHROG	phrog_4525	NA	unknown function
UHGV-0134352_4	PHROG	phrog_1904	endolysin; lysM motif	lysis
UHGV-0134352_4	UniRef90	UniRef90_A0A125W9C0	LysM domain protein	NA
UHGV-0134352_4	eggNOG-mapper	1201292.DR75_1486	LysM domain	NA
UHGV-0134352_4	Pfam	PF01476	LysM domain	LysM
UHGV-0134352_4	COG	COG1388	LysM repeat	NA
UHGV-0134352_5	PHROG	phrog_87	metallo-protease	other
UHGV-0134352_5	UniRef90	UniRef90_A0A828LU36	Peptidase_M78 domain-containing protein	NA
UHGV-0134352_5	eggNOG-mapper	565664.EFXG_01809	IrrE N-terminal-like domain	NA
UHGV-0134352_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0134352_5	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0134352_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0134352_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134352_6	UniRef90	UniRef90_S4FCW0	DNA-binding helix-turn-helix protein	NA
UHGV-0134352_6	eggNOG-mapper	565664.EFXG_01136	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134352_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134352_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134352_6	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0134352_7	UniRef90	UniRef90_UPI00137B59E0	helix-turn-helix domain-containing protein	NA
UHGV-0134352_7	eggNOG-mapper	1140002.I570_01474	Homeodomain-like domain	NA
UHGV-0134352_8	UniRef90	UniRef90_A0A855P5P9	MerR family transcriptional regulator	NA
UHGV-0134352_8	eggNOG-mapper	226185.EF_2846	transposase activity	NA
UHGV-0134352_8	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-0134352_8	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0134352_8	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-0134352_9	PHROG	phrog_1592	NA	unknown function
UHGV-0134352_10	PHROG	phrog_1463	NA	unknown function
UHGV-0134352_11	PHROG	phrog_4690	NA	unknown function
UHGV-0134352_12	PHROG	phrog_3012	NA	unknown function
UHGV-0134352_12	eggNOG-mapper	1201292.DR75_1666	NA	NA
UHGV-0134352_12	Structural annotation	PF00410, MF_01302_B	NA	NA
UHGV-0134352_13	PHROG	phrog_15434	NA	unknown function
UHGV-0134352_14	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0134352_14	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0134352_14	UniRef90	UniRef90_A0A0M2A8Q8	Phage RecT family recombinase	NA
UHGV-0134352_14	eggNOG-mapper	226185.EF_2841	RecT family	NA
UHGV-0134352_14	Pfam	PF03837	RecT family	RecT
UHGV-0134352_14	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0134352_14	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0134352_15	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134352_15	UniRef90	UniRef90_Q830E7	NA	NA
UHGV-0134352_15	eggNOG-mapper	1201292.DR75_1661	NA	NA
UHGV-0134352_15	Pfam	PF12684	NA	DUF3799
UHGV-0134352_15	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0134352_15	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0134352_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0134352_16	UniRef90	UniRef90_A0A8E7GKN6	DnaD domain protein	NA
UHGV-0134352_16	eggNOG-mapper	226185.EF_2839	DnaD domain protein	NA
UHGV-0134352_16	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0134352_16	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0134352_16	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0134352_16	Structural annotation	PF09681, NF033788, COG5529	NA	NA
UHGV-0134352_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0134352_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0134352_17	UniRef90	UniRef90_A0A059N2Y7	AAA domain-containing protein	NA
UHGV-0134352_17	eggNOG-mapper	226185.EF_2838	IstB-like ATP binding protein	NA
UHGV-0134352_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0134352_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0134352_17	Structural annotation	PF01695, MF_00377, NF005931, COG1484	NA	NA
UHGV-0134352_18	PHROG	phrog_13888	NA	unknown function
UHGV-0134352_18	eggNOG-mapper	1201292.DR75_1658	NA	NA
UHGV-0134352_18	Structural annotation	PF11011	NA	NA
UHGV-0134352_19	PHROG	phrog_28610	NA	unknown function
UHGV-0134352_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0134352_20	UniRef90	UniRef90_UPI001785D8EB	NA	NA
UHGV-0134352_20	eggNOG-mapper	226185.EF_2836	NA	NA
UHGV-0134352_20	Pfam	PF06356	NA	DUF1064
UHGV-0134352_21	PHROG	phrog_5403	NA	unknown function
UHGV-0134352_21	UniRef90	UniRef90_V5XLE1	Gp58	NA
UHGV-0134352_21	eggNOG-mapper	1201292.DR75_1656	NA	NA
UHGV-0134352_22	PHROG	phrog_2131	NA	unknown function
UHGV-0134352_22	eggNOG-mapper	1445810.A0A0A0PKY2_9CAUD	NA	NA
UHGV-0134352_23	PHROG	phrog_6270	NA	unknown function
UHGV-0134352_23	UniRef90	UniRef90_D2IYU7	PcfU	NA
UHGV-0134352_24	PHROG	phrog_98	NA	unknown function
UHGV-0134352_24	UniRef90	UniRef90_UPI000CF32DAE	YopX family protein	NA
UHGV-0134352_24	eggNOG-mapper	1201292.DR75_1526	YopX protein	NA
UHGV-0134352_24	Pfam	PF09643	YopX protein	YopX
UHGV-0134352_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0134352_25	PHROG	phrog_13489	NA	unknown function
UHGV-0134352_25	eggNOG-mapper	1158602.I590_00660	NA	NA
UHGV-0134352_26	PHROG	phrog_17071	NA	unknown function
UHGV-0134352_27	PHROG	phrog_34651	NA	unknown function
UHGV-0134352_28	PHROG	phrog_121	NA	unknown function
UHGV-0134352_28	UniRef90	UniRef90_UPI0006684B7A	NA	NA
UHGV-0134352_28	eggNOG-mapper	226185.EF_2118	NA	NA
UHGV-0134352_28	Pfam	PF07852	NA	DUF1642
UHGV-0134352_28	Structural annotation	PF07852	NA	NA
UHGV-0134352_29	PHROG	phrog_4960	NA	unknown function
UHGV-0134352_29	eggNOG-mapper	1300150.EMQU_0784	NA	NA
UHGV-0134352_29	Structural annotation	PF06004, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-0134352_30	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0134352_30	UniRef90	UniRef90_E0HBW7	Phage transcriptional regulator, ArpU family	NA
UHGV-0134352_30	eggNOG-mapper	226185.EF_2828	NA	NA
UHGV-0134352_30	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0134352_30	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-0134352_31	PHROG	phrog_1202	NA	unknown function
UHGV-0134352_31	eggNOG-mapper	1158602.I590_01678	NA	NA
UHGV-0134352_31	Structural annotation	PF18789	NA	NA
UHGV-0134352_32	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0134352_32	UniRef90	UniRef90_UPI001BAAEE14	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0134352_32	eggNOG-mapper	1201292.DR75_1644	NA	NA
UHGV-0134352_32	Structural annotation	PF09124	NA	NA
UHGV-0134352_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0134352_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134352_33	UniRef90	UniRef90_A0A059N394	HNH endonuclease domain protein	NA
UHGV-0134352_33	eggNOG-mapper	226185.EF_2825	HNH endonuclease	NA
UHGV-0134352_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0134352_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0134352_33	Structural annotation	PF05766	NA	NA
UHGV-0134352_34	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0134352_34	UniRef90	UniRef90_A0A2K8TFV2	Terminase small subunit	NA
UHGV-0134352_34	eggNOG-mapper	1201292.DR75_1642	NA	NA
UHGV-0134352_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0134352_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0134352_35	UniRef90	UniRef90_Q830G3	Terminase, large subunit, putative	NA
UHGV-0134352_35	eggNOG-mapper	1201292.DR75_1641	Phage Terminase	NA
UHGV-0134352_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0134352_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0134352_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0134352_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0134352_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0134352_36	UniRef90	UniRef90_UPI00070DAF81	phage portal protein	NA
UHGV-0134352_36	eggNOG-mapper	1201292.DR75_1640	Phage portal protein	NA
UHGV-0134352_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0134352_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0134352_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0134352_37	KOfam	K06904	NA	NA
UHGV-0134352_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0134352_37	UniRef90	UniRef90_E2YRX8	Phage prohead protease, HK97 family	NA
UHGV-0134352_37	eggNOG-mapper	1201292.DR75_1639	Caudovirus prohead serine protease	NA
UHGV-0134352_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0134352_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0134352_37	COG	COG3740	Phage head maturation protease	NA
UHGV-0134352_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0134352_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0134352_38	UniRef90	UniRef90_A0A059N399	Phage major capsid protein, HK97 family	NA
UHGV-0134352_38	eggNOG-mapper	1201292.DR75_1638	Phage capsid family	NA
UHGV-0134352_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0134352_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0134352_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0134352_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134352_39	PHROG	phrog_4609	NA	unknown function
UHGV-0134352_39	UniRef90	UniRef90_UPI00115CD357	head-tail connector protein	NA
UHGV-0134352_39	eggNOG-mapper	1201292.DR75_1637	Phage gp6-like head-tail connector protein	NA
UHGV-0134352_39	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0134352_39	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0134352_40	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0134352_40	UniRef90	UniRef90_A0A059N3M1	Putative phage head-tail adaptor	NA
UHGV-0134352_40	eggNOG-mapper	1201292.DR75_1636	Phage head-tail joining protein	NA
UHGV-0134352_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0134352_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0134352_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0134352_41	UniRef90	UniRef90_A0A377L6F7	NA	NA
UHGV-0134352_41	eggNOG-mapper	1201292.DR75_1635	NA	NA
UHGV-0134352_41	Structural annotation	PF20765	NA	NA
UHGV-0134352_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0134352_42	UniRef90	UniRef90_A0A8I1FA83	HK97 gp10 family phage protein	NA
UHGV-0134352_42	eggNOG-mapper	1201292.DR75_1634	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0134352_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0134352_42	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0134352_42	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0134352_43	PHROG	phrog_11502	tail protein	tail
UHGV-0134352_43	UniRef90	UniRef90_A0A8I1F7N5	Phage tail protein	NA
UHGV-0134352_43	eggNOG-mapper	1201292.DR75_1633	NA	NA
UHGV-0134352_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0134352_44	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0134352_44	UniRef90	UniRef90_A0A177ZYW5	NA	NA
UHGV-0134352_44	eggNOG-mapper	1201292.DR75_1632	NA	NA
UHGV-0134352_44	Structural annotation	PF11836	NA	NA
UHGV-0134352_45	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0134352_45	UniRef90	UniRef90_A0A059N3D7	Phage tail tape measure protein, TP901 family	NA
UHGV-0134352_45	eggNOG-mapper	1201292.DR75_1631	Phage-related minor tail protein	NA
UHGV-0134352_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0134352_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0134352_45	COG	COG5283	Phage-related tail protein	NA
UHGV-0134352_45	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0134352_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0134352_46	UniRef90	UniRef90_UPI001F365DD9	phage tail protein	NA
UHGV-0134352_46	eggNOG-mapper	226185.EF_2812	phage tail	NA
UHGV-0134352_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0134352_46	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0134352_47	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0134352_47	UniRef90	UniRef90_Q830H5	Minor structural protein	NA
UHGV-0134352_47	eggNOG-mapper	226185.EF_2811	Prophage endopeptidase tail	NA
UHGV-0134352_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0134352_47	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0134352_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-0134352_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0134352_47	COG	COG4926	Phage-related protein	NA
UHGV-0134352_47	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0134352_48	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0134352_48	UniRef90	UniRef90_UPI000F811C55	phage baseplate upper protein	NA
UHGV-0134352_48	eggNOG-mapper	1201292.DR75_1628	NA	NA
UHGV-0134352_48	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0134352_48	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0134352_49	PHROG	phrog_9625	NA	unknown function
UHGV-0134352_49	eggNOG-mapper	1158607.UAU_01045	NA	NA
UHGV-0134352_50	PHROG	phrog_6907	NA	unknown function
UHGV-0134352_50	UniRef90	UniRef90_A0A2T5D5H6	Collagen-like protein	NA
UHGV-0134352_50	eggNOG-mapper	1158607.UAU_01046	NA	NA
UHGV-0134352_51	UniRef90	UniRef90_C9BVF1	Predicted protein	NA
UHGV-0134352_51	eggNOG-mapper	1158607.UAU_01047	NA	NA
UHGV-0134352_52	PHROG	phrog_1536	NA	unknown function
UHGV-0134352_52	eggNOG-mapper	226185.EF_2806	NA	NA
UHGV-0134352_53	PHROG	phrog_134	NA	unknown function
UHGV-0134352_53	UniRef90	UniRef90_A0A826HER6	XkdX family protein	NA
UHGV-0134352_53	eggNOG-mapper	226185.EF_2805	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0134352_53	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0134352_53	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0134352_53	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0134352_54	PHROG	phrog_689	holin	lysis
UHGV-0134352_54	UniRef90	UniRef90_D2IYY0	Holin	NA
UHGV-0134352_54	eggNOG-mapper	226185.EF_2804	Haemolysin XhlA	NA
UHGV-0134352_54	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0134352_55	PHROG	phrog_881	holin	lysis
UHGV-0134352_55	UniRef90	UniRef90_A0A0M2AAC9	Holin	NA
UHGV-0134352_55	eggNOG-mapper	226185.EF_2803	Putative phage holin Dp-1	NA
UHGV-0134352_55	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0134352_55	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0134352_56	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0134352_56	PHROG	phrog_291	endolysin	lysis
UHGV-0134352_56	UniRef90	UniRef90_D2J077	Lysozyme	NA
UHGV-0134352_56	eggNOG-mapper	226185.EF_0355	and GP 10880731	NA
UHGV-0134352_56	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0134352_56	Pfam	PF01476	LysM domain	LysM
UHGV-0134352_56	COG	COG1388	LysM repeat	NA
UHGV-0134352_56	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA