UHGV-0134362

Genome information

Genome length 31,654 bps

CDS count 44

Completeness 88.08% (medium-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134362
vOTU ID	vOTU-027180
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_374552
BioSample	SAMN03418268
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.82
Jumbo phage	No

Genome content
Genome length	31,654 bps
GC content	53.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.80%
Average CDS length	691.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134362_1	KOfam	K14059	int; integrase	NA
UHGV-0134362_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0134362_1	UniRef90	UniRef90_A0A3D4EI13	Site-specific integrase	NA
UHGV-0134362_1	eggNOG-mapper	1291050.JAGE01000002_gene3375	Belongs to the 'phage' integrase family	NA
UHGV-0134362_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0134362_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0134362_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134362_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0134362_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0134362_3	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0134362_3	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0134362_3	UniRef90	UniRef90_A0A3D4EJK1	Exonuclease domain-containing protein	NA
UHGV-0134362_3	eggNOG-mapper	365044.Pnap_4120	PFAM Exonuclease, RNase T and DNA polymerase III	NA
UHGV-0134362_3	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0134362_3	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0134362_3	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0134362_3	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0134362_3	Structural annotation	PF00929, MF_00045, NF004964, COG0847	NA	NA
UHGV-0134362_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0134362_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0134362_4	UniRef90	UniRef90_A0A3D4EH08	LexA family transcriptional regulator	NA
UHGV-0134362_4	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0134362_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134362_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0134362_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0134362_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0134362_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134362_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0134362_5	UniRef90	UniRef90_A0A3D4EHK5	HTH cro/C1-type domain-containing protein	NA
UHGV-0134362_5	eggNOG-mapper	1392502.JNIO01000002_gene278	sequence-specific DNA binding	NA
UHGV-0134362_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134362_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134362_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0134362_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0134362_6	UniRef90	UniRef90_A0A3D4EJF0	XRE family transcriptional regulator	NA
UHGV-0134362_6	eggNOG-mapper	742738.HMPREF9460_04043	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134362_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134362_6	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0134362_6	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0134362_7	UniRef90	UniRef90_UPI00117C9CA9	helix-turn-helix domain-containing protein	NA
UHGV-0134362_7	eggNOG-mapper	1291050.JAGE01000002_gene3380	NA	NA
UHGV-0134362_7	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0134362_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134362_8	UniRef90	UniRef90_UPI001F33ADD3	helix-turn-helix domain-containing protein	NA
UHGV-0134362_8	eggNOG-mapper	693746.OBV_30130	NA	NA
UHGV-0134362_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0134362_8	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0134362_8	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0134362_9	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0134362_9	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0134362_9	UniRef90	UniRef90_A0A3D4EGZ7	DNA helicase	NA
UHGV-0134362_9	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0134362_9	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0134362_9	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0134362_9	COG	COG0305	Replicative DNA helicase	NA
UHGV-0134362_9	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0134362_11	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0134362_11	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0134362_11	UniRef90	UniRef90_A0A3D4EI23	ParA family protein	NA
UHGV-0134362_11	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0134362_11	Pfam	PF13614	AAA domain	AAA_31
UHGV-0134362_11	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0134362_11	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0134362_12	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0134362_12	PHROG	phrog_27290	NA	unknown function
UHGV-0134362_12	UniRef90	UniRef90_A0A3D4EJM0	Chromosome partitioning protein ParB	NA
UHGV-0134362_12	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0134362_12	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0134362_12	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0134362_12	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0134362_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134362_15	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0134362_15	Structural annotation	PF21578	NA	NA
UHGV-0134362_16	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0134362_16	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0134362_16	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0134362_16	Structural annotation	PF14205	NA	NA
UHGV-0134362_17	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134362_17	UniRef90	UniRef90_A0A3D4EH89	HNH endonuclease	NA
UHGV-0134362_17	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0134362_17	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0134362_17	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0134362_18	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0134362_18	UniRef90	UniRef90_A0A7X9I6W6	Phage terminase small subunit P27 family	NA
UHGV-0134362_18	eggNOG-mapper	935948.KE386495_gene1337	Phage terminase, small subunit	NA
UHGV-0134362_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0134362_18	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0134362_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0134362_20	UniRef90	UniRef90_A0A3D4EH51	Terminase large subunit	NA
UHGV-0134362_20	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0134362_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0134362_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0134362_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0134362_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0134362_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0134362_22	UniRef90	UniRef90_A0A3D4EI33	Phage portal protein	NA
UHGV-0134362_22	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0134362_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0134362_22	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0134362_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0134362_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0134362_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0134362_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0134362_23	UniRef90	UniRef90_A0A3D4EJM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0134362_23	eggNOG-mapper	1122917.KB899683_gene4778	Clp protease	NA
UHGV-0134362_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0134362_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0134362_23	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0134362_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0134362_24	UniRef90	UniRef90_A0A3D4EJL4	Phage major capsid protein	NA
UHGV-0134362_24	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0134362_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0134362_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0134362_24	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134362_26	PHROG	phrog_25	head closure Hc1	connector
UHGV-0134362_26	UniRef90	UniRef90_A0A3D4EHM1	Head-tail adaptor protein	NA
UHGV-0134362_26	eggNOG-mapper	1414720.CBYM010000001_gene701	Phage head-tail joining protein	NA
UHGV-0134362_26	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0134362_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0134362_26	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0134362_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0134362_27	UniRef90	UniRef90_A0A4Y8M6J6	HK97 gp10 family phage protein	NA
UHGV-0134362_27	eggNOG-mapper	324057.Pjdr2_1547	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0134362_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0134362_27	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0134362_28	Structural annotation	PF12691	NA	NA
UHGV-0134362_29	PHROG	phrog_158	major tail protein	tail
UHGV-0134362_29	UniRef90	UniRef90_UPI001CD1679E	phage tail tube protein	NA
UHGV-0134362_29	eggNOG-mapper	1414720.CBYM010000001_gene704	Phage tail tube protein	NA
UHGV-0134362_29	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0134362_29	Structural annotation	PF16461, TIGR02241, COG5437	NA	NA
UHGV-0134362_30	PHROG	phrog_2115	tail protein	tail
UHGV-0134362_30	eggNOG-mapper	1536773.R70331_25685	NA	NA
UHGV-0134362_30	Structural annotation	PF11836	NA	NA
UHGV-0134362_32	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0134362_32	UniRef90	UniRef90_A0A5S5BNB8	Phage-related protein	NA
UHGV-0134362_32	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0134362_32	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0134362_33	PHROG	phrog_1194	NA	unknown function
UHGV-0134362_33	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0134362_33	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0134362_34	PHROG	phrog_13879	NA	unknown function
UHGV-0134362_34	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0134362_34	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0134362_38	PHROG	phrog_35892	NA	unknown function
UHGV-0134362_38	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0134362_38	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0134362_38	COG	COG5492	NA	NA
UHGV-0134362_41	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0134362_41	PHROG	phrog_20388	endolysin	lysis
UHGV-0134362_41	UniRef90	UniRef90_A0A843HNI7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0134362_41	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0134362_41	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0134362_41	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0134362_41	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0134362_41	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0134362_42	PHROG	phrog_199	holin	lysis
UHGV-0134362_42	UniRef90	UniRef90_R5CV03	Toxin secretion/phage lysis holin	NA
UHGV-0134362_42	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0134362_42	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0134362_42	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0134362_42	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0134362_42	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0134362_44	eggNOG-mapper	565034.BHWA1_01460	AAA domain, putative AbiEii toxin, Type IV TA system	NA
UHGV-0134362_44	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA