UHGV-0134376

Genome information

Genome length 39,848 bps

CDS count 48

Completeness 100.00% (complete)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134376
vOTU ID	vOTU-045967
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_364977
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.59
Jumbo phage	No

Genome content
Genome length	39,848 bps
GC content	56.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.77%
Average CDS length	763.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134376_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0134376_1	UniRef90	UniRef90_K1SX16	Site-specific DNA methylase	NA
UHGV-0134376_1	eggNOG-mapper	622312.ROSEINA2194_01264	C-5 cytosine-specific DNA methylase	NA
UHGV-0134376_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0134376_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0134376_2	eggNOG-mapper	411473.RUMCAL_00286	C-5 cytosine-specific DNA methylase	NA
UHGV-0134376_2	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0134376_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0134376_3	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0134376_3	UniRef90	UniRef90_D4K450	Methyltransferase	NA
UHGV-0134376_3	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0134376_3	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0134376_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0134376_3	COG	COG0863	DNA modification methylase	NA
UHGV-0134376_3	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0134376_6	PHROG	phrog_3136	NA	unknown function
UHGV-0134376_6	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0134376_6	Pfam	PF04266	ASCH domain	ASCH
UHGV-0134376_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0134376_7	PHROG	phrog_22543	NA	unknown function
UHGV-0134376_7	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0134376_10	PHROG	phrog_5781	NA	unknown function
UHGV-0134376_10	UniRef90	UniRef90_A0A413FXK8	NA	NA
UHGV-0134376_10	eggNOG-mapper	1397284.AYMN01000083_gene2419	NA	NA
UHGV-0134376_10	Pfam	PF14359	NA	DUF4406
UHGV-0134376_10	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0134376_10	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0134376_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134376_11	eggNOG-mapper	1226322.HMPREF1545_03841	NA	NA
UHGV-0134376_11	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0134376_13	UniRef90	UniRef90_A0A3A9EH82	Helix-turn-helix domain-containing protein	NA
UHGV-0134376_13	eggNOG-mapper	397288.C806_03010	NA	NA
UHGV-0134376_13	Structural annotation	PF13542	NA	NA
UHGV-0134376_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134376_14	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0134376_14	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-0134376_14	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-0134376_14	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0134376_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134376_14	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0134376_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-0134376_15	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-0134376_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0134376_16	KOfam	K07584	NA	NA
UHGV-0134376_16	PHROG	phrog_4478	peptidase	other
UHGV-0134376_16	UniRef90	UniRef90_UPI001D097508	ribosomal-processing cysteine protease Prp	NA
UHGV-0134376_16	eggNOG-mapper	555088.DealDRAFT_1009	Pfam:Peptidase_C108	NA
UHGV-0134376_16	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0134376_16	COG	COG2868	NA	NA
UHGV-0134376_16	Structural annotation	PF04327, NF011133, COG2868	NA	NA
UHGV-0134376_17	PHROG	phrog_13908	NA	unknown function
UHGV-0134376_17	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0134376_18	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0134376_18	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-0134376_18	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-0134376_18	Pfam	PF13252	NA	DUF4043
UHGV-0134376_18	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0134376_18	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0134376_20	PHROG	phrog_12105	NA	unknown function
UHGV-0134376_20	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0134376_21	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0134376_21	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0134376_21	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0134376_22	PHROG	phrog_15074	NA	unknown function
UHGV-0134376_22	UniRef90	UniRef90_UPI000E5CB7B2	phage tail protein	NA
UHGV-0134376_22	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0134376_22	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0134376_23	PHROG	phrog_372	tail protein	tail
UHGV-0134376_23	UniRef90	UniRef90_UPI0002BB22B5	NA	NA
UHGV-0134376_23	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0134376_23	Pfam	PF05895	NA	DUF859
UHGV-0134376_23	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG5608	NA	NA
UHGV-0134376_24	PHROG	phrog_2649	endolysin	lysis
UHGV-0134376_24	UniRef90	UniRef90_A0A810PWK0	PG_binding_1 domain-containing protein	NA
UHGV-0134376_24	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-0134376_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0134376_24	Structural annotation	PF01471, TIGR02869, COG3409	NA	NA
UHGV-0134376_25	PHROG	phrog_22978	NA	unknown function
UHGV-0134376_25	UniRef90	UniRef90_A0A2V2FDI6	MuF_C domain-containing protein	NA
UHGV-0134376_25	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-0134376_25	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0134376_25	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0134376_25	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0134376_27	PHROG	phrog_1129	holin	lysis
UHGV-0134376_27	UniRef90	UniRef90_A0A810PUU2	Holin	NA
UHGV-0134376_27	eggNOG-mapper	1410668.JNKC01000001_gene1676	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0134376_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0134376_27	Structural annotation	PF06946	NA	NA
UHGV-0134376_28	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0134376_28	PHROG	phrog_435	endolysin	lysis
UHGV-0134376_28	UniRef90	UniRef90_A0A810PZ73	SPOR domain-containing protein	NA
UHGV-0134376_28	eggNOG-mapper	697281.Mahau_0598	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0134376_28	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0134376_28	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0134376_28	Pfam	PF05036	SPOR domain	SPOR
UHGV-0134376_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0134376_28	Structural annotation	PF01520, PF08230, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0134376_29	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0134376_29	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0134376_30	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0134376_32	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0134376_33	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0134376_33	PHROG	phrog_95	integrase	integration and excision
UHGV-0134376_33	UniRef90	UniRef90_G4KP73	Putative site-specific recombinase	NA
UHGV-0134376_33	eggNOG-mapper	693746.OBV_21880	Resolvase, N terminal domain	NA
UHGV-0134376_33	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0134376_33	Pfam	PF07508	Recombinase	Recombinase
UHGV-0134376_33	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0134376_33	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0134376_33	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0134376_34	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0134376_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134376_34	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0134376_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134376_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0134376_36	UniRef90	UniRef90_A0A1C6CFH8	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0134376_36	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0134376_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134376_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134376_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0134376_38	UniRef90	UniRef90_UPI001BCDFE46	KTSC domain-containing protein	NA
UHGV-0134376_38	eggNOG-mapper	756499.Desde_3141	Bacterial Ig-like domain 2	NA
UHGV-0134376_38	Pfam	PF13619	KTSC domain	KTSC
UHGV-0134376_38	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0134376_38	COG	COG5492	NA	NA
UHGV-0134376_39	Structural annotation	PF21327	NA	NA
UHGV-0134376_41	eggNOG-mapper	1519439.JPJG01000060_gene1868	NA	NA
UHGV-0134376_42	PHROG	phrog_7566	NA	unknown function
UHGV-0134376_42	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0134376_42	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0134376_45	Structural annotation	NF040595	NA	NA
UHGV-0134376_48	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0134376_48	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0134376_48	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0134376_48	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0134376_48	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0134376_48	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0134376_48	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA