UHGV-0134407

Genome information

Genome length 39,433 bps

CDS count 48

Completeness 90.51% (high-quality)

geNomad score 0.9551

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134407
vOTU ID	vOTU-011198
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_385358
BioSample	SAMN04261158
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9551
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.26
Jumbo phage	No

Genome content
Genome length	39,433 bps
GC content	48.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	95.89%
Average CDS length	791.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134407_1	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134407_1	eggNOG-mapper	261292.Nit79A3_1404	ROK family	NA
UHGV-0134407_1	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0134407_4	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0134407_4	PHROG	phrog_14430	NA	unknown function
UHGV-0134407_4	UniRef90	UniRef90_A0A1W9SBS6	AAA_15 domain-containing protein	NA
UHGV-0134407_4	eggNOG-mapper	1034807.FBFL15_0679	AAA ATPase domain	NA
UHGV-0134407_4	PADLOC	AAA_21	NA	NA
UHGV-0134407_4	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0134407_4	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-0134407_4	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0134407_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0134407_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0134407_6	eggNOG-mapper	330214.NIDE4217	DNA packaging	NA
UHGV-0134407_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0134407_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0134407_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134407_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0134407_7	UniRef90	UniRef90_UPI0018DD6464	terminase family protein	NA
UHGV-0134407_7	eggNOG-mapper	1408428.JNJP01000030_gene963	Terminase RNaseH-like domain	NA
UHGV-0134407_7	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-0134407_7	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0134407_9	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0134407_9	UniRef90	UniRef90_A0A3C1FAU3	Phage tail protein	NA
UHGV-0134407_9	eggNOG-mapper	1072685.IX83_07100	Bacteriophage head to tail connecting protein	NA
UHGV-0134407_9	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0134407_9	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0134407_10	PHROG	phrog_528	NA	unknown function
UHGV-0134407_11	PHROG	phrog_458	protease	other
UHGV-0134407_11	UniRef90	UniRef90_A0A1Y4DJB1	Death domain-containing protein	NA
UHGV-0134407_11	eggNOG-mapper	28152.DJ57_2256	NA	NA
UHGV-0134407_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0134407_12	UniRef90	UniRef90_A0A6J5MGX3	Major capsid protein	NA
UHGV-0134407_12	eggNOG-mapper	1401067.HMPREF0872_06795	NA	NA
UHGV-0134407_12	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0134407_12	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134407_13	PHROG	phrog_427	NA	unknown function
UHGV-0134407_13	eggNOG-mapper	215158.Q858G7_BPE15	NA	NA
UHGV-0134407_13	Pfam	PF21190	Bbp16	Bbp16
UHGV-0134407_13	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0134407_14	PHROG	phrog_394	tail protein	tail
UHGV-0134407_14	eggNOG-mapper	207559.Dde_2546	NA	NA
UHGV-0134407_14	Structural annotation	PF17212	NA	NA
UHGV-0134407_15	PHROG	phrog_376	tail protein	tail
UHGV-0134407_15	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0134407_15	eggNOG-mapper	1123288.SOV_1c10720	NA	NA
UHGV-0134407_16	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0134407_16	UniRef90	UniRef90_A0A6S4P9Y0	Gp42	NA
UHGV-0134407_16	eggNOG-mapper	1279038.KB907338_gene1157	NA	NA
UHGV-0134407_16	Structural annotation	PF11039, MF_02210, NF011709, COG0456	NA	NA
UHGV-0134407_17	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0134407_19	PHROG	phrog_9880	NA	unknown function
UHGV-0134407_19	UniRef90	UniRef90_A0A353GYD4	GGDEF domain-containing protein	NA
UHGV-0134407_19	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0134407_19	Pfam	PF18834	Large polyvalent protein associated domain 22	LPD22
UHGV-0134407_19	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0134407_20	PHROG	phrog_1640	tail protein	tail
UHGV-0134407_20	eggNOG-mapper	1121445.ATUZ01000011_gene713	NA	NA
UHGV-0134407_21	PHROG	phrog_1640	tail protein	tail
UHGV-0134407_21	eggNOG-mapper	665942.HMPREF1022_00147	NA	NA
UHGV-0134407_21	Structural annotation	PF03906	NA	NA
UHGV-0134407_23	eggNOG-mapper	556269.ACDQ01000006_gene1705	Phage Tail Collar Domain	NA
UHGV-0134407_23	COG	COG4675	Phage tail collar domain	NA
UHGV-0134407_26	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0134407_26	PHROG	phrog_7	endolysin	lysis
UHGV-0134407_26	UniRef90	UniRef90_A0A1Y4DMM0	Lysozyme	NA
UHGV-0134407_26	eggNOG-mapper	1117318.PRUB_08799	Phage lysozyme	NA
UHGV-0134407_26	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0134407_26	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0134407_26	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0134407_29	UniRef90	UniRef90_B1H0N3	Anaerobic ribonucleoside-triphosphate reductase (Class III) small subunit	NA
UHGV-0134407_29	eggNOG-mapper	944480.ATUV01000001_gene645	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0134407_29	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0134407_29	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0134407_30	KOfam	K14059	int; integrase	NA
UHGV-0134407_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0134407_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134407_30	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0134407_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0134407_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134407_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134407_33	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0134407_37	PHROG	phrog_415	polynucleotide kinase	other
UHGV-0134407_37	UniRef90	UniRef90_UPI000A773F69	polynucleotide kinase	NA
UHGV-0134407_37	eggNOG-mapper	1229203.KI301992_gene693	AAA domain	NA
UHGV-0134407_37	COG	COG4639	Predicted kinase	NA
UHGV-0134407_37	Structural annotation	PF03767, TIGR01533, COG2503	NA	NA
UHGV-0134407_40	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0134407_40	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0134407_40	UniRef90	UniRef90_A0A6M3IXH4	Putative methyltransferase	NA
UHGV-0134407_40	eggNOG-mapper	665950.HMPREF1025_01456	MT-A70	NA
UHGV-0134407_40	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0134407_40	Pfam	PF05063	MT-A70	MT-A70
UHGV-0134407_40	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0134407_40	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0134407_45	PHROG	phrog_98	NA	unknown function
UHGV-0134407_45	UniRef90	UniRef90_UPI0015896781	YopX family protein	NA
UHGV-0134407_45	eggNOG-mapper	120574.Q94M55_9CAUD	YopX protein	NA
UHGV-0134407_45	Pfam	PF09643	YopX protein	YopX
UHGV-0134407_45	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0134407_45	Structural annotation	PF09643, TIGR01671	NA	NA