UHGV-0134534

Genome information

Genome length 29,223 bps

CDS count 47

Completeness 68.44% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134534
vOTU ID	vOTU-023861
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394010
BioSample	SAMN04436831
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.44% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	32
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	84.4
Jumbo phage	No

Genome content
Genome length	29,223 bps
GC content	35.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.01%
Average CDS length	582.96 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134534_1	PHROG	phrog_3446	NA	unknown function
UHGV-0134534_1	UniRef90	UniRef90_A0A125W7U0	PBECR4 domain-containing protein	NA
UHGV-0134534_1	eggNOG-mapper	1158607.UAU_05161	NA	NA
UHGV-0134534_1	Pfam	PF18813	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	PBECR4
UHGV-0134534_1	Structural annotation	PF18813	NA	NA
UHGV-0134534_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0134534_2	PHROG	phrog_833	endolysin	lysis
UHGV-0134534_2	UniRef90	UniRef90_E0HBZ2	SH3 domain protein	NA
UHGV-0134534_2	eggNOG-mapper	1201292.DR75_1620	Ami_2	NA
UHGV-0134534_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0134534_2	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0134534_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0134534_2	Structural annotation	PF08460, PF01510, PF09629, MF_04111, NF008758, COG5632	NA	NA
UHGV-0134534_3	PHROG	phrog_881	holin	lysis
UHGV-0134534_3	UniRef90	UniRef90_A0A0M2AAC9	Holin	NA
UHGV-0134534_3	eggNOG-mapper	1201292.DR75_1493	Putative phage holin Dp-1	NA
UHGV-0134534_3	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0134534_3	Structural annotation	PF16938, COG3237	NA	NA
UHGV-0134534_4	PHROG	phrog_689	holin	lysis
UHGV-0134534_4	UniRef90	UniRef90_D2IYY0	Holin	NA
UHGV-0134534_4	eggNOG-mapper	1201292.DR75_1622	Haemolysin XhlA	NA
UHGV-0134534_4	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0134534_5	PHROG	phrog_134	NA	unknown function
UHGV-0134534_5	UniRef90	UniRef90_A0A826HER6	XkdX family protein	NA
UHGV-0134534_5	eggNOG-mapper	226185.EF_2805	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0134534_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0134534_5	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0134534_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0134534_6	PHROG	phrog_1536	NA	unknown function
UHGV-0134534_6	eggNOG-mapper	1201292.DR75_1624	NA	NA
UHGV-0134534_7	PHROG	phrog_7911	tail protein	tail
UHGV-0134534_7	UniRef90	UniRef90_C9BVF1	Predicted protein	NA
UHGV-0134534_7	eggNOG-mapper	1201292.DR75_1497	NA	NA
UHGV-0134534_8	PHROG	phrog_6907	NA	unknown function
UHGV-0134534_8	eggNOG-mapper	272626.lin0173	NA	NA
UHGV-0134534_9	PHROG	phrog_22125	NA	unknown function
UHGV-0134534_9	eggNOG-mapper	1201292.DR75_1499	NA	NA
UHGV-0134534_10	PHROG	phrog_6042	minor head protein	head and packaging
UHGV-0134534_10	UniRef90	UniRef90_UPI0011437FDD	phage baseplate upper protein	NA
UHGV-0134534_10	eggNOG-mapper	1201292.DR75_1500	NA	NA
UHGV-0134534_10	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0134534_10	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0134534_11	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0134534_11	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0134534_11	UniRef90	UniRef90_R3JH31	Phage minor structural protein	NA
UHGV-0134534_11	eggNOG-mapper	1201292.DR75_1501	Prophage endopeptidase tail	NA
UHGV-0134534_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0134534_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0134534_11	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0134534_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0134534_11	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0134534_11	Structural annotation	PF14594, PF01551, PF18013, TIGR01665, NF040883, COG4926, COG0739	NA	NA
UHGV-0134534_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0134534_12	UniRef90	UniRef90_UPI001A8F464D	phage tail protein	NA
UHGV-0134534_12	eggNOG-mapper	1158604.I591_00537	phage tail	NA
UHGV-0134534_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0134534_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0134534_13	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0134534_13	UniRef90	UniRef90_R3J3I9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0134534_13	eggNOG-mapper	226185.EF_2813	Phage-related minor tail protein	NA
UHGV-0134534_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0134534_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0134534_13	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0134534_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0134534_14	PHROG	phrog_4888	tail assembly chaperone	tail
UHGV-0134534_14	UniRef90	UniRef90_W7D9N8	NA	NA
UHGV-0134534_14	eggNOG-mapper	226185.EF_2814	NA	NA
UHGV-0134534_14	Structural annotation	PF11836	NA	NA
UHGV-0134534_15	PHROG	phrog_11502	tail protein	tail
UHGV-0134534_15	UniRef90	UniRef90_E0HBX9	Phage major tail protein, phi13 family	NA
UHGV-0134534_15	eggNOG-mapper	226185.EF_2815	NA	NA
UHGV-0134534_15	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0134534_15	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0134534_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0134534_16	UniRef90	UniRef90_E6EVG3	Phage protein, HK97 gp10 family	NA
UHGV-0134534_16	eggNOG-mapper	226185.EF_2816	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0134534_16	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0134534_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0134534_16	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0134534_17	PHROG	phrog_78	tail terminator	connector
UHGV-0134534_17	UniRef90	UniRef90_A0A0M2A8L3	NA	NA
UHGV-0134534_17	eggNOG-mapper	226185.EF_2817	NA	NA
UHGV-0134534_17	Structural annotation	PF20765	NA	NA
UHGV-0134534_18	PHROG	phrog_4014	head-tail adaptor	connector
UHGV-0134534_18	UniRef90	UniRef90_A0A0M2A8D0	Phage minor structural protein	NA
UHGV-0134534_18	eggNOG-mapper	1158614.I592_02331	Phage head-tail joining protein	NA
UHGV-0134534_18	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0134534_18	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0134534_18	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0134534_19	PHROG	phrog_4609	NA	unknown function
UHGV-0134534_19	UniRef90	UniRef90_UPI00191BBEB2	phage gp6-like head-tail connector protein	NA
UHGV-0134534_19	eggNOG-mapper	1158614.I592_02332	Phage gp6-like head-tail connector protein	NA
UHGV-0134534_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0134534_20	UniRef90	UniRef90_E0HBX4	Phage major capsid protein, HK97 family	NA
UHGV-0134534_20	eggNOG-mapper	1158614.I592_02333	Phage capsid family	NA
UHGV-0134534_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0134534_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0134534_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0134534_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134534_21	KOfam	K06904	NA	NA
UHGV-0134534_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0134534_21	UniRef90	UniRef90_E0HBX3	Phage prohead protease, HK97 family	NA
UHGV-0134534_21	eggNOG-mapper	1158614.I592_02334	Caudovirus prohead serine protease	NA
UHGV-0134534_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0134534_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0134534_21	COG	COG3740	Phage head maturation protease	NA
UHGV-0134534_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0134534_22	PHROG	phrog_12	portal protein	head and packaging
UHGV-0134534_22	UniRef90	UniRef90_A0A0M2A8P0	HK97 family phage portal protein	NA
UHGV-0134534_22	eggNOG-mapper	1158614.I592_02335	Phage portal protein	NA
UHGV-0134534_22	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0134534_22	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0134534_22	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0134534_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0134534_23	UniRef90	UniRef90_E0HBX1	Putative phage terminase, large subunit	NA
UHGV-0134534_23	eggNOG-mapper	1158614.I592_02336	Phage Terminase	NA
UHGV-0134534_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0134534_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0134534_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0134534_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0134534_24	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0134534_24	UniRef90	UniRef90_A0A2W4BC49	Terminase	NA
UHGV-0134534_24	eggNOG-mapper	1158614.I592_02337	NA	NA
UHGV-0134534_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0134534_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0134534_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134534_25	UniRef90	UniRef90_A0A0M2A8Z0	HNHc domain-containing protein	NA
UHGV-0134534_25	eggNOG-mapper	1145276.T479_01605	HNH endonuclease	NA
UHGV-0134534_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0134534_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0134534_25	Structural annotation	PF05766	NA	NA
UHGV-0134534_27	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0134534_27	UniRef90	UniRef90_E0HBW7	Phage transcriptional regulator, ArpU family	NA
UHGV-0134534_27	eggNOG-mapper	226185.EF_2828	NA	NA
UHGV-0134534_27	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0134534_27	Structural annotation	PF04545, TIGR01637, COG1342	NA	NA
UHGV-0134534_28	PHROG	phrog_4615	NA	unknown function
UHGV-0134534_29	PHROG	phrog_6513	NA	unknown function
UHGV-0134534_30	PHROG	phrog_23115	NA	unknown function
UHGV-0134534_30	eggNOG-mapper	1201292.DR75_1650	NA	NA
UHGV-0134534_31	PHROG	phrog_1150	NA	unknown function
UHGV-0134534_31	UniRef90	UniRef90_UPI000E07B593	Lar family restriction alleviation protein	NA
UHGV-0134534_31	eggNOG-mapper	1201292.DR75_1651	NA	NA
UHGV-0134534_32	PHROG	phrog_98	NA	unknown function
UHGV-0134534_32	UniRef90	UniRef90_C9E2N7	YopX domain-containing protein	NA
UHGV-0134534_32	eggNOG-mapper	663241.C9E2N7_9CAUD	YopX protein	NA
UHGV-0134534_32	Pfam	PF09643	YopX protein	YopX
UHGV-0134534_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0134534_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0134534_33	PHROG	phrog_6270	NA	unknown function
UHGV-0134534_33	UniRef90	UniRef90_D2IYU7	PcfU	NA
UHGV-0134534_34	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0134534_34	UniRef90	UniRef90_D2IZ07	DNA cytosine methyltransferase	NA
UHGV-0134534_34	eggNOG-mapper	673832.D2IYU6_9CAUD	methyltransferase activity	NA
UHGV-0134534_34	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0134534_34	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0134534_34	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0134534_35	PHROG	phrog_5677	NA	unknown function
UHGV-0134534_36	PHROG	phrog_10188	NA	unknown function
UHGV-0134534_36	eggNOG-mapper	1140001.I571_02092	NA	NA
UHGV-0134534_37	PHROG	phrog_4880	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0134534_37	UniRef90	UniRef90_E0HGB1	Phage replisome organizer N-terminal domain protein	NA
UHGV-0134534_37	eggNOG-mapper	663241.C9E2N2_9CAUD	calcium ion binding	NA
UHGV-0134534_37	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0134534_37	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0134534_37	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0134534_38	PHROG	phrog_398	NA	unknown function
UHGV-0134534_38	UniRef90	UniRef90_UPI000330E66A	putative HNHc nuclease	NA
UHGV-0134534_38	eggNOG-mapper	663241.C9E2N1_9CAUD	Pfam:HNHc_6	NA
UHGV-0134534_38	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0134534_38	Structural annotation	PF16784	NA	NA
UHGV-0134534_39	PHROG	phrog_674	NA	unknown function
UHGV-0134534_39	UniRef90	UniRef90_UPI001CF35DC8	NA	NA
UHGV-0134534_39	eggNOG-mapper	663241.C9E2N0_9CAUD	NA	NA
UHGV-0134534_39	Pfam	PF07083	NA	DUF1351
UHGV-0134534_39	Structural annotation	PF07083	NA	NA
UHGV-0134534_40	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0134534_40	UniRef90	UniRef90_A0A2S7M5R4	Single-stranded DNA-binding protein	NA
UHGV-0134534_40	eggNOG-mapper	663241.C9E2M9_9CAUD	ERF superfamily	NA
UHGV-0134534_40	Pfam	PF04404	ERF superfamily	ERF
UHGV-0134534_40	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0134534_41	PHROG	phrog_5100	NA	unknown function
UHGV-0134534_42	PHROG	phrog_4384	NA	unknown function
UHGV-0134534_43	PHROG	phrog_21427	NA	unknown function
UHGV-0134534_44	PHROG	phrog_1592	NA	unknown function
UHGV-0134534_45	PHROG	phrog_904	excisionase	integration and excision
UHGV-0134534_45	UniRef90	UniRef90_K8E769	Protein	NA
UHGV-0134534_46	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0134534_46	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0134534_46	UniRef90	UniRef90_C9E2M3	Antirepressor	NA
UHGV-0134534_46	eggNOG-mapper	663241.C9E2M3_9CAUD	DNA binding	NA
UHGV-0134534_46	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0134534_46	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0134534_46	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0134534_47	UniRef90	UniRef90_C9E2M2	Cro-like repressor	NA
UHGV-0134534_47	eggNOG-mapper	663241.C9E2M2_9CAUD	NA	NA
UHGV-0134534_47	Pfam	PF05339	NA	DUF739
UHGV-0134534_47	Structural annotation	PF05339, NF002773, COG1476	NA	NA