UHGV-0134543

Genome information

Genome length 34,449 bps

CDS count 54

Completeness 71.83% (medium-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134543
vOTU ID	vOTU-023214
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365560
BioSample	SAMN03283292
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.63
Jumbo phage	No

Genome content
Genome length	34,449 bps
GC content	29.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.64%
Average CDS length	607.83 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134543_1	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0134543_1	UniRef90	UniRef90_A0A7X1CQL5	Phage terminase large subunit	NA
UHGV-0134543_1	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0134543_1	COG	COG5410	NA	NA
UHGV-0134543_2	PHROG	phrog_64	portal protein	head and packaging
UHGV-0134543_2	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0134543_2	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0134543_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0134543_2	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0134543_3	Structural annotation	PF14265	NA	NA
UHGV-0134543_4	PHROG	phrog_247	major head protein	head and packaging
UHGV-0134543_4	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-0134543_4	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0134543_4	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0134543_4	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0134543_5	Structural annotation	PF05135	NA	NA
UHGV-0134543_6	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0134543_9	Structural annotation	PF05657	NA	NA
UHGV-0134543_10	Structural annotation	PF16463, PF17892, MF_04116, TIGR02241, NF012211, COG5437	NA	NA
UHGV-0134543_11	Structural annotation	PF10666	NA	NA
UHGV-0134543_13	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0134543_13	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0134543_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134543_14	UniRef90	UniRef90_R7HLP8	Prophage LambdaSa2 HNH endonuclease family protein	NA
UHGV-0134543_14	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-0134543_14	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0134543_14	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0134543_14	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0134543_14	Structural annotation	PF07463	NA	NA
UHGV-0134543_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0134543_15	eggNOG-mapper	428127.EUBDOL_01563	homoserine transmembrane transporter activity	NA
UHGV-0134543_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0134543_15	Structural annotation	PF20155	NA	NA
UHGV-0134543_16	PHROG	phrog_1194	NA	unknown function
UHGV-0134543_16	Pfam	PF20458	NA	DUF6711
UHGV-0134543_16	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0134543_17	eggNOG-mapper	1121333.JMLH01000047_gene1007	NA	NA
UHGV-0134543_17	Structural annotation	PF16466, TIGR03361, COG3500	NA	NA
UHGV-0134543_18	PHROG	phrog_372	tail protein	tail
UHGV-0134543_18	UniRef90	UniRef90_A0A1I5GAN2	PKD domain-containing protein	NA
UHGV-0134543_18	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0134543_18	COG	COG4675	Phage tail collar domain	NA
UHGV-0134543_18	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG1361, COG4675	NA	NA
UHGV-0134543_19	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0134543_22	Structural annotation	PF16938	NA	NA
UHGV-0134543_23	UniRef90	UniRef90_A0A7C6RR32	M23 family metallopeptidase	NA
UHGV-0134543_23	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0134543_23	Structural annotation	PF01551, PF08460, NF040883, COG0739, COG3103	NA	NA
UHGV-0134543_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0134543_27	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0134543_28	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0134543_28	UniRef90	UniRef90_A0A357NGS6	Phage_rep_org_N domain-containing protein	NA
UHGV-0134543_28	eggNOG-mapper	927704.SELR_18440	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0134543_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0134543_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0134543_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0134543_29	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0134543_32	PHROG	phrog_674	NA	unknown function
UHGV-0134543_32	UniRef90	UniRef90_A0A6G7XVX9	NA	NA
UHGV-0134543_32	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0134543_32	Pfam	PF07083	NA	DUF1351
UHGV-0134543_32	Structural annotation	PF07083	NA	NA
UHGV-0134543_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0134543_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0134543_33	UniRef90	UniRef90_A0A1Y4UGZ1	Recombinase	NA
UHGV-0134543_33	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0134543_33	Pfam	PF03837	RecT family	RecT
UHGV-0134543_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0134543_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0134543_33	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0134543_34	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134543_34	UniRef90	UniRef90_A0A3A4V9M8	HNHc domain-containing protein	NA
UHGV-0134543_34	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0134543_34	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0134543_34	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0134543_34	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0134543_34	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0134543_35	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0134543_35	UniRef90	UniRef90_R6N9D6	Metallo-beta-lactamase domain protein	NA
UHGV-0134543_35	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0134543_35	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0134543_38	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0134543_38	PHROG	phrog_200	lipoprotein	other
UHGV-0134543_38	UniRef90	UniRef90_R6BHX9	PHB domain-containing protein	NA
UHGV-0134543_38	eggNOG-mapper	649747.HMPREF0083_03347	HflC protein	NA
UHGV-0134543_38	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0134543_38	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0134543_38	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0134543_42	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0134543_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0134543_42	UniRef90	UniRef90_A0A8I1X9E3	Tyrosine-type recombinase/integrase	NA
UHGV-0134543_42	eggNOG-mapper	1231336.L248_2264	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0134543_42	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-0134543_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134543_42	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0134543_42	Structural annotation	PF00589, PF02899, MF_01807, NF001399, COG4974	NA	NA
UHGV-0134543_43	eggNOG-mapper	1297617.JPJD01000029_gene2398	NA	NA
UHGV-0134543_44	PHROG	phrog_2164	NA	unknown function
UHGV-0134543_44	eggNOG-mapper	1260356.D920_00267	NA	NA
UHGV-0134543_51	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0134543_51	UniRef90	UniRef90_UPI001C2BB323	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0134543_51	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0134543_51	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0134543_51	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0134543_53	PHROG	phrog_625	NA	unknown function
UHGV-0134543_53	UniRef90	UniRef90_A0A373D1H8	ASCH domain-containing protein	NA
UHGV-0134543_53	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0134543_54	PHROG	phrog_12156	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0134543_54	UniRef90	UniRef90_A0A564RYQ8	AlbA_2 domain-containing protein	NA
UHGV-0134543_54	eggNOG-mapper	658655.HMPREF0988_02781	Putative ATP-dependent DNA helicase recG C-terminal	NA
UHGV-0134543_54	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-0134543_54	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA