UHGV-0134586

Genome information

Genome length 44,706 bps

CDS count 76

Completeness 100.00% (complete)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134586
vOTU ID	vOTU-001495
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367542
BioSample	SAMN03283272
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.58
Jumbo phage	No

Genome content
Genome length	44,706 bps
GC content	45.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	89.00%
Average CDS length	527.61 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134586_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0134586_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0134586_3	UniRef90	UniRef90_A0A351URM1	Tyr recombinase domain-containing protein (Fragment)	NA
UHGV-0134586_3	eggNOG-mapper	610130.Closa_0719	Belongs to the 'phage' integrase family	NA
UHGV-0134586_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0134586_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134586_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0134586_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0134586_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0134586_4	PHROG	phrog_435	endolysin	lysis
UHGV-0134586_4	UniRef90	UniRef90_A0A355TJT7	MurNAc-LAA domain-containing protein	NA
UHGV-0134586_4	eggNOG-mapper	1414720.CBYM010000040_gene1663	Ami_3	NA
UHGV-0134586_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0134586_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0134586_4	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0134586_6	PHROG	phrog_2329	NA	unknown function
UHGV-0134586_6	UniRef90	UniRef90_A0A7C6Z4D9	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0134586_6	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0134586_6	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0134586_7	KOfam	K14059	int; integrase	NA
UHGV-0134586_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0134586_7	UniRef90	UniRef90_A0A1C6K4B6	Tyrosine recombinase XerD	NA
UHGV-0134586_7	eggNOG-mapper	742740.HMPREF9474_03478	DNA integration	NA
UHGV-0134586_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134586_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0134586_7	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0134586_8	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0134586_8	PHROG	phrog_19856	NA	unknown function
UHGV-0134586_8	UniRef90	UniRef90_A0A371JCG1	Ftsk_gamma domain-containing protein	NA
UHGV-0134586_8	eggNOG-mapper	658086.HMPREF0994_04914	Restriction endonuclease	NA
UHGV-0134586_8	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0134586_8	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0134586_8	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0134586_8	Structural annotation	PF04471, NF002876, COG1787	NA	NA
UHGV-0134586_9	PHROG	phrog_87	metallo-protease	other
UHGV-0134586_9	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0134586_9	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0134586_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0134586_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0134586_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0134586_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134586_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134586_10	UniRef90	UniRef90_UPI001570EBDA	helix-turn-helix transcriptional regulator	NA
UHGV-0134586_10	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0134586_10	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0134586_10	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0134586_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134586_11	UniRef90	UniRef90_UPI00046674E5	helix-turn-helix domain-containing protein	NA
UHGV-0134586_11	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134586_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134586_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134586_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0134586_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0134586_13	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0134586_13	UniRef90	UniRef90_UPI001BEF1365	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0134586_13	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0134586_13	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0134586_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0134586_13	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0134586_13	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0134586_14	PHROG	phrog_7024	NA	unknown function
UHGV-0134586_14	eggNOG-mapper	693746.OBV_41700	NA	NA
UHGV-0134586_14	AcrCatalog	cluster_1398	NA	NA
UHGV-0134586_15	PHROG	phrog_36464	NA	unknown function
UHGV-0134586_15	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0134586_15	Structural annotation	PF09035	NA	NA
UHGV-0134586_20	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0134586_20	UniRef90	UniRef90_R6SKJ6	Siphovirus family protein	NA
UHGV-0134586_20	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0134586_20	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0134586_20	Structural annotation	PF05565	NA	NA
UHGV-0134586_21	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134586_21	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0134586_21	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0134586_23	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0134586_23	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0134586_23	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0134586_24	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134586_24	UniRef90	UniRef90_UPI001A9B7C73	conserved phage C-terminal domain-containing protein	NA
UHGV-0134586_24	eggNOG-mapper	1304866.K413DRAFT_1200	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0134586_24	Pfam	PF19808	NA	DUF6291
UHGV-0134586_24	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0134586_24	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0134586_24	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0134586_24	Structural annotation	PF19808	NA	NA
UHGV-0134586_26	PHROG	phrog_7964	NA	unknown function
UHGV-0134586_26	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0134586_26	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0134586_26	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0134586_26	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0134586_28	PHROG	phrog_14697	NA	unknown function
UHGV-0134586_28	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0134586_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0134586_29	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0134586_29	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0134586_29	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0134586_29	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0134586_30	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0134586_30	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0134586_30	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0134586_30	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0134586_30	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0134586_30	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0134586_30	COG	COG0863	DNA modification methylase	NA
UHGV-0134586_30	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0134586_31	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0134586_31	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0134586_31	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-0134586_31	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0134586_31	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0134586_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0134586_31	COG	COG0863	DNA modification methylase	NA
UHGV-0134586_31	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0134586_32	Pfam	PF04448	NA	DUF551
UHGV-0134586_36	PHROG	phrog_874	NA	unknown function
UHGV-0134586_36	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0134586_36	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0134586_36	Pfam	PF04266	ASCH domain	ASCH
UHGV-0134586_36	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0134586_38	PHROG	phrog_8684	NA	unknown function
UHGV-0134586_38	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0134586_38	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0134586_38	Pfam	PF09643	YopX protein	YopX
UHGV-0134586_38	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0134586_38	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0134586_43	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0134586_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134586_44	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0134586_44	UniRef90	UniRef90_A0A412EKJ9	PBSX family phage terminase large subunit	NA
UHGV-0134586_44	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0134586_44	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0134586_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0134586_44	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0134586_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0134586_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134586_44	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0134586_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0134586_45	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0134586_45	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0134586_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0134586_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0134586_47	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0134586_47	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0134586_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0134586_47	COG	COG2369	NA	NA
UHGV-0134586_47	Structural annotation	PF06152	NA	NA
UHGV-0134586_48	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0134586_48	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0134586_50	PHROG	phrog_21718	NA	unknown function
UHGV-0134586_50	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0134586_52	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0134586_54	PHROG	phrog_20016	NA	unknown function
UHGV-0134586_54	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0134586_54	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0134586_54	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0134586_55	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0134586_58	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0134586_58	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0134586_59	PHROG	phrog_247	major head protein	head and packaging
UHGV-0134586_59	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0134586_59	eggNOG-mapper	1292035.H476_1014	NA	NA
UHGV-0134586_59	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0134586_59	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0134586_59	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0134586_60	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0134586_60	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0134586_61	PHROG	phrog_28328	NA	unknown function
UHGV-0134586_62	PHROG	phrog_1233	NA	unknown function
UHGV-0134586_62	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0134586_63	PHROG	phrog_1129	holin	lysis
UHGV-0134586_63	UniRef90	UniRef90_A0A417JD09	Enolase	NA
UHGV-0134586_63	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0134586_63	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0134586_63	Structural annotation	PF06946	NA	NA
UHGV-0134586_64	PHROG	phrog_9479	NA	unknown function
UHGV-0134586_64	Structural annotation	PF15529	NA	NA
UHGV-0134586_65	PHROG	phrog_8680	NA	unknown function
UHGV-0134586_65	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0134586_65	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0134586_65	Pfam	PF14386	NA	DUF4417
UHGV-0134586_65	Structural annotation	PF14386	NA	NA
UHGV-0134586_66	PHROG	phrog_3366	NA	unknown function
UHGV-0134586_66	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0134586_66	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0134586_67	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0134586_67	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0134586_67	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0134586_67	Structural annotation	PF11114	NA	NA
UHGV-0134586_68	PHROG	phrog_3266	tail completion	connector
UHGV-0134586_68	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0134586_68	Structural annotation	PF12691	NA	NA
UHGV-0134586_69	PHROG	phrog_3099	NA	unknown function
UHGV-0134586_69	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0134586_69	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0134586_70	PHROG	phrog_11299	NA	unknown function
UHGV-0134586_70	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0134586_70	Structural annotation	PF10666	NA	NA
UHGV-0134586_71	PHROG	phrog_706	NA	unknown function
UHGV-0134586_71	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0134586_71	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0134586_71	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0134586_71	Structural annotation	PF06854	NA	NA
UHGV-0134586_72	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0134586_72	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0134586_72	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0134586_72	COG	COG5412	Phage-related protein	NA
UHGV-0134586_73	PHROG	phrog_1194	NA	unknown function
UHGV-0134586_73	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0134586_74	PHROG	phrog_6616	tail protein	tail
UHGV-0134586_74	UniRef90	UniRef90_A0A173R8I5	Peptidase S74 domain-containing protein	NA
UHGV-0134586_74	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0134586_74	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0134586_74	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0134586_75	PHROG	phrog_25888	NA	unknown function
UHGV-0134586_75	eggNOG-mapper	33035.JPJF01000093_gene2239	NA	NA
UHGV-0134586_76	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0134586_76	COG	COG4675	Phage tail collar domain	NA