UHGV-0134640

Genome information

Genome length 40,823 bps

CDS count 66

Completeness 73.32% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134640
vOTU ID	vOTU-039994
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_380484
BioSample	SAMN04158622
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.14
Jumbo phage	No

Genome content
Genome length	40,823 bps
GC content	44.76%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	89.94%
Average CDS length	560.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134640_2	PHROG	phrog_24616	NA	unknown function
UHGV-0134640_2	eggNOG-mapper	762984.HMPREF9445_00184	NA	NA
UHGV-0134640_2	Structural annotation	PF20459	NA	NA
UHGV-0134640_3	PHROG	phrog_11226	portal protein	head and packaging
UHGV-0134640_3	eggNOG-mapper	357276.EL88_08355	NA	NA
UHGV-0134640_3	Structural annotation	PF04860, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-0134640_4	PHROG	phrog_37138	NA	unknown function
UHGV-0134640_4	UniRef90	UniRef90_A0A3D6EB93	BIG2 domain-containing protein	NA
UHGV-0134640_4	eggNOG-mapper	762984.HMPREF9445_00182	NA	NA
UHGV-0134640_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0134640_5	PHROG	phrog_21217	NA	unknown function
UHGV-0134640_5	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-0134640_6	PHROG	phrog_38780	NA	unknown function
UHGV-0134640_6	UniRef90	UniRef90_F3PDX2	Conserved domain protein	NA
UHGV-0134640_6	eggNOG-mapper	357276.EL88_08370	NA	NA
UHGV-0134640_6	Structural annotation	PF05065, MF_04119, NF033394, COG4653	NA	NA
UHGV-0134640_7	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0134640_7	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0134640_7	UniRef90	UniRef90_A0A3D6E908	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0134640_7	eggNOG-mapper	1347393.HG726026_gene2525	Clp protease	NA
UHGV-0134640_7	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0134640_7	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0134640_7	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0134640_8	PHROG	phrog_17790	NA	unknown function
UHGV-0134640_8	UniRef90	UniRef90_A0A3N2MW96	Mor domain-containing protein	NA
UHGV-0134640_8	eggNOG-mapper	435590.BVU_0954	NA	NA
UHGV-0134640_9	PHROG	phrog_2523	NA	unknown function
UHGV-0134640_9	UniRef90	UniRef90_A0A349NI23	Addiction module toxin RelE	NA
UHGV-0134640_9	eggNOG-mapper	1235803.C825_01724	NA	NA
UHGV-0134640_9	Pfam	PF05973	NA	Gp49
UHGV-0134640_9	COG	COG4679	Phage-related protein	NA
UHGV-0134640_9	Structural annotation	PF05973, TIGR00053, COG4683	NA	NA
UHGV-0134640_10	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0134640_10	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0134640_10	UniRef90	UniRef90_R5S3S3	HTH cro/C1-type domain-containing protein	NA
UHGV-0134640_10	eggNOG-mapper	1235803.C825_01723	Helix-turn-helix domain	NA
UHGV-0134640_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134640_10	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0134640_10	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0134640_12	eggNOG-mapper	762984.HMPREF9445_00172	NA	NA
UHGV-0134640_12	Structural annotation	NF033848, COG4379	NA	NA
UHGV-0134640_13	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0134640_13	PHROG	phrog_37298	NA	unknown function
UHGV-0134640_13	UniRef90	UniRef90_A0A3D6EBN7	PhageMin_Tail domain-containing protein	NA
UHGV-0134640_13	eggNOG-mapper	762984.HMPREF9445_00173	domain protein	NA
UHGV-0134640_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0134640_13	COG	COG1511	NA	NA
UHGV-0134640_13	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0134640_14	PHROG	phrog_37065	NA	unknown function
UHGV-0134640_14	eggNOG-mapper	357276.EL88_08395	NA	NA
UHGV-0134640_14	Structural annotation	PF12245, PF06199, TIGR02126, TIGR04488, COG4718	NA	NA
UHGV-0134640_15	PHROG	phrog_31246	NA	unknown function
UHGV-0134640_15	eggNOG-mapper	1122931.AUAE01000005_gene3263	NA	NA
UHGV-0134640_16	PHROG	phrog_33245	NA	unknown function
UHGV-0134640_16	eggNOG-mapper	357276.EL88_08405	NA	NA
UHGV-0134640_16	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0134640_17	PHROG	phrog_28240	NA	unknown function
UHGV-0134640_17	UniRef90	UniRef90_F3PDW0	Conserved domain protein	NA
UHGV-0134640_17	eggNOG-mapper	762984.HMPREF9445_00168	NA	NA
UHGV-0134640_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134640_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0134640_18	UniRef90	UniRef90_A0A3D6E9M8	Phage portal protein	NA
UHGV-0134640_18	eggNOG-mapper	357276.EL88_08415	Phage terminase large subunit	NA
UHGV-0134640_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0134640_18	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0134640_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0134640_19	UniRef90	UniRef90_A0A6N2UJJ1	Transposase	NA
UHGV-0134640_19	eggNOG-mapper	357276.EL88_12710	Helix-turn-helix of insertion element transposase	NA
UHGV-0134640_19	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0134640_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0134640_19	Structural annotation	PF07141	NA	NA
UHGV-0134640_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0134640_23	PHROG	phrog_9226	NA	unknown function
UHGV-0134640_23	eggNOG-mapper	1112217.PPL19_05310	NA	NA
UHGV-0134640_25	Structural annotation	PF16670	NA	NA
UHGV-0134640_26	eggNOG-mapper	742817.HMPREF9449_00840	NA	NA
UHGV-0134640_27	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0134640_27	UniRef90	UniRef90_A0A1M6XDH2	BRO family, N-terminal domain	NA
UHGV-0134640_27	eggNOG-mapper	1122991.BAIZ01000025_gene1905	BRO family, N-terminal domain	NA
UHGV-0134640_27	PADLOC	BstA	BstA	Abi
UHGV-0134640_27	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0134640_27	COG	COG3617	Prophage antirepressor	NA
UHGV-0134640_27	Structural annotation	PF02498, NF008573, COG3617	NA	NA
UHGV-0134640_29	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0134640_29	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-0134640_29	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0134640_29	Pfam	PF14359	NA	DUF4406
UHGV-0134640_29	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0134640_30	PHROG	phrog_28300	NA	unknown function
UHGV-0134640_30	eggNOG-mapper	483215.BACFIN_06266	NA	NA
UHGV-0134640_32	PHROG	phrog_8684	NA	unknown function
UHGV-0134640_32	UniRef90	UniRef90_UPI001F3CE393	YopX family protein	NA
UHGV-0134640_32	eggNOG-mapper	563008.HMPREF0665_02419	YopX protein	NA
UHGV-0134640_32	Pfam	PF09643	YopX protein	YopX
UHGV-0134640_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0134640_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0134640_33	PHROG	phrog_625	NA	unknown function
UHGV-0134640_33	UniRef90	UniRef90_A0A395V9H0	ASCH domain-containing protein	NA
UHGV-0134640_33	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0134640_33	Structural annotation	PF12961, NF003443	NA	NA
UHGV-0134640_37	PHROG	phrog_32914	NA	unknown function
UHGV-0134640_37	UniRef90	UniRef90_A0A7K0JNA1	NA	NA
UHGV-0134640_38	eggNOG-mapper	1227266.HMPREF1551_00558	NA	NA
UHGV-0134640_39	PHROG	phrog_15937	NA	unknown function
UHGV-0134640_39	eggNOG-mapper	1121100.JCM6294_1075	NA	NA
UHGV-0134640_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0134640_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0134640_40	UniRef90	UniRef90_A0A3D6E8X7	DNA helicase	NA
UHGV-0134640_40	eggNOG-mapper	742727.HMPREF9447_04780	Participates in initiation and elongation during chromosome replication	NA
UHGV-0134640_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0134640_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0134640_40	COG	COG0305	Replicative DNA helicase	NA
UHGV-0134640_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0134640_41	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0134640_41	UniRef90	UniRef90_A0A413ITS5	NA	NA
UHGV-0134640_41	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-0134640_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0134640_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0134640_41	Structural annotation	PF14297	NA	NA
UHGV-0134640_43	PHROG	phrog_11501	NA	unknown function
UHGV-0134640_43	UniRef90	UniRef90_A0A8B2AZE4	NA	NA
UHGV-0134640_43	eggNOG-mapper	1121100.JCM6294_1069	NA	NA
UHGV-0134640_43	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0134640_44	PHROG	phrog_12688	NA	unknown function
UHGV-0134640_44	eggNOG-mapper	1121100.JCM6294_1068	NA	NA
UHGV-0134640_44	Structural annotation	PF10382, TIGR02276	NA	NA
UHGV-0134640_45	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0134640_45	eggNOG-mapper	1122971.BAME01000006_gene913	NA	NA
UHGV-0134640_45	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0134640_47	Structural annotation	PF02767, TIGR00663, COG0592	NA	NA
UHGV-0134640_48	PHROG	phrog_4932	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0134640_48	UniRef90	UniRef90_A0A3R6HN06	NA	NA
UHGV-0134640_48	eggNOG-mapper	1168034.FH5T_04325	COG NOG19098 non supervised orthologous group	NA
UHGV-0134640_48	Pfam	PF11325	NA	DUF3127
UHGV-0134640_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0134640_48	Structural annotation	PF11325, MF_00720, NF005241, COG2965	NA	NA
UHGV-0134640_49	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0134640_49	eggNOG-mapper	435591.BDI_0854	NA	NA
UHGV-0134640_49	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0134640_51	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0134640_51	UniRef90	UniRef90_A0A5S5D227	ERF superfamily protein	NA
UHGV-0134640_51	eggNOG-mapper	1327970.R9ZVT8_9CAUD	ERF superfamily	NA
UHGV-0134640_51	Pfam	PF04404	ERF superfamily	ERF
UHGV-0134640_51	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0134640_56	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-0134640_56	UniRef90	UniRef90_A0A2W4VLM7	DNA-binding protein	NA
UHGV-0134640_56	eggNOG-mapper	28229.ND2E_0069	Excisionase	NA
UHGV-0134640_56	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0134640_56	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0134640_56	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0134640_56	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0134640_57	PHROG	phrog_16858	NA	unknown function
UHGV-0134640_57	Structural annotation	PF08587	NA	NA
UHGV-0134640_58	UniRef90	UniRef90_A0A3D6E926	HTH cro/C1-type domain-containing protein	NA
UHGV-0134640_58	eggNOG-mapper	619693.HMPREF6745_2480	Peptidase S24-like	NA
UHGV-0134640_58	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0134640_59	eggNOG-mapper	906968.Trebr_1128	NA	NA
UHGV-0134640_60	PHROG	phrog_15286	NA	unknown function
UHGV-0134640_60	UniRef90	UniRef90_A0A412QK38	Bro-N domain-containing protein	NA
UHGV-0134640_60	eggNOG-mapper	411901.BACCAC_01298	BRO family, N-terminal domain	NA
UHGV-0134640_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0134640_60	COG	COG3617	Prophage antirepressor	NA
UHGV-0134640_61	eggNOG-mapper	483216.BACEGG_02343	NA	NA
UHGV-0134640_62	eggNOG-mapper	765869.BDW_04925	NA	NA
UHGV-0134640_63	Pfam	PF14207	DpnD/PcfM-like protein	DpnD-PcfM
UHGV-0134640_64	PHROG	phrog_1086	NA	unknown function
UHGV-0134640_64	UniRef90	UniRef90_A0A3D6E990	NA	NA
UHGV-0134640_64	eggNOG-mapper	449673.BACSTE_00248	WYL_2, Sm-like SH3 beta-barrel fold	NA
UHGV-0134640_64	Pfam	PF10902	WYL_2, Sm-like SH3 beta-barrel fold	WYL_2
UHGV-0134640_64	Structural annotation	PF10902	NA	NA
UHGV-0134640_66	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0134640_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134640_66	UniRef90	UniRef90_A0A5M6BHS5	Helix-turn-helix transcriptional regulator	NA
UHGV-0134640_66	eggNOG-mapper	411476.BACOVA_02995	NA	NA
UHGV-0134640_66	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134640_66	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134640_66	Structural annotation	PF01381, NF041951, COG1396	NA	NA