UHGV-0134856

Genome information

Genome length 35,674 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134856
vOTU ID	vOTU-045975
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393155
BioSample	SAMN04436700
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.01
Jumbo phage	No

Genome content
Genome length	35,674 bps
GC content	52.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.16%
Average CDS length	716.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134856_1	PHROG	phrog_2536	Rz-like spanin	lysis
UHGV-0134856_1	UniRef90	UniRef90_A0A078L721	NA	NA
UHGV-0134856_1	eggNOG-mapper	637910.ROD_10412	NA	NA
UHGV-0134856_2	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0134856_2	PHROG	phrog_7	endolysin	lysis
UHGV-0134856_2	UniRef90	UniRef90_A0A376F149	Lysozyme	NA
UHGV-0134856_2	eggNOG-mapper	40631.LYS_BPN15	Phage lysozyme	NA
UHGV-0134856_2	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0134856_2	HAMAP	MF_04110	Endolysin	NA
UHGV-0134856_2	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0134856_3	PHROG	phrog_1350	holin	lysis
UHGV-0134856_5	KOfam	K16568	exoZ; exopolysaccharide production protein ExoZ	NA
UHGV-0134856_5	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0134856_5	UniRef90	UniRef90_UPI000CFA09CE	acyltransferase	NA
UHGV-0134856_5	eggNOG-mapper	28152.DJ57_2240	Acyltransferase family	NA
UHGV-0134856_5	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0134856_5	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0134856_5	Structural annotation	PF01757, MF_01949, NF003014, COG1835	NA	NA
UHGV-0134856_6	PHROG	phrog_30017	NA	unknown function
UHGV-0134856_6	UniRef90	UniRef90_UPI000F845346	phage tail fiber protein	NA
UHGV-0134856_6	eggNOG-mapper	1005994.GTGU_01416	Belongs to the glycosyl hydrolase 28 family	NA
UHGV-0134856_6	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0134856_6	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0134856_6	COG	COG5434	Polygalacturonase	NA
UHGV-0134856_7	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0134856_7	UniRef90	UniRef90_A0A7D5L6F2	Phage terminase large subunit	NA
UHGV-0134856_7	eggNOG-mapper	1005994.GTGU_01417	chromosome segregation	NA
UHGV-0134856_7	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0134856_7	COG	COG5410	NA	NA
UHGV-0134856_7	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5323	NA	NA
UHGV-0134856_8	PHROG	phrog_9277	NA	unknown function
UHGV-0134856_8	eggNOG-mapper	1005994.GTGU_01418	NA	NA
UHGV-0134856_9	PHROG	phrog_16310	NA	unknown function
UHGV-0134856_9	eggNOG-mapper	1005994.GTGU_01420	NA	NA
UHGV-0134856_9	Structural annotation	MF_04121	NA	NA
UHGV-0134856_10	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0134856_10	PHROG	phrog_1044	endolysin	lysis
UHGV-0134856_10	UniRef90	UniRef90_UPI000EF1E625	transglycosylase SLT domain-containing protein	NA
UHGV-0134856_10	eggNOG-mapper	1005994.GTGU_01421	Transglycosylase SLT domain	NA
UHGV-0134856_10	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0134856_10	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0134856_11	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0134856_11	eggNOG-mapper	1005994.GTGU_01422	NA	NA
UHGV-0134856_11	Structural annotation	PF09486	NA	NA
UHGV-0134856_12	KOfam	K16704	rffC, wecD; dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase [EC:2.3.1.210]	NA
UHGV-0134856_12	PHROG	phrog_1249	acetyltransferase	other
UHGV-0134856_12	UniRef90	UniRef90_A0A455VWW9	N-acetyltransferase domain-containing protein	NA
UHGV-0134856_12	eggNOG-mapper	343509.SG1191	Acetyltransferase (GNAT) family	NA
UHGV-0134856_12	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0134856_12	COG	COG1247	L-amino acid N-acyltransferase MnaT	NA
UHGV-0134856_12	Structural annotation	PF13527, MF_02210, NF000021, COG0456	NA	NA
UHGV-0134856_13	PHROG	phrog_376	tail protein	tail
UHGV-0134856_13	eggNOG-mapper	1005994.GTGU_01424	NA	NA
UHGV-0134856_13	Structural annotation	PF11134, MF_00923, NF008351, COG5276	NA	NA
UHGV-0134856_14	PHROG	phrog_394	tail protein	tail
UHGV-0134856_14	eggNOG-mapper	1005994.GTGU_01425	NA	NA
UHGV-0134856_14	Structural annotation	PF17212	NA	NA
UHGV-0134856_15	PHROG	phrog_3437	major head protein	head and packaging
UHGV-0134856_15	UniRef90	UniRef90_UPI001C126928	phage capsid protein	NA
UHGV-0134856_15	eggNOG-mapper	343509.SG1188	NA	NA
UHGV-0134856_15	Pfam	PF19821	Phage capsid protein	Phage_capsid_2
UHGV-0134856_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0134856_17	PHROG	phrog_3742	NA	unknown function
UHGV-0134856_17	UniRef90	UniRef90_A0A5J6B4M5	Endoprotease	NA
UHGV-0134856_17	eggNOG-mapper	1005994.GTGU_01427	NA	NA
UHGV-0134856_18	PHROG	phrog_5977	NA	unknown function
UHGV-0134856_18	eggNOG-mapper	1005994.GTGU_01428	NA	NA
UHGV-0134856_19	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0134856_19	UniRef90	UniRef90_A0A851GAE3	Head-tail connector protein	NA
UHGV-0134856_19	eggNOG-mapper	1005994.GTGU_01429	Bacteriophage head to tail connecting protein	NA
UHGV-0134856_19	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0134856_19	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0134856_20	PHROG	phrog_9015	NA	unknown function
UHGV-0134856_20	eggNOG-mapper	1005994.GTGU_01430	NA	NA
UHGV-0134856_21	PHROG	phrog_17476	NA	unknown function
UHGV-0134856_21	eggNOG-mapper	2342.SOPEG_1816	NA	NA
UHGV-0134856_22	PHROG	phrog_16553	transcriptional repressor	transcription regulation
UHGV-0134856_22	UniRef90	UniRef90_A0A5S4UJ76	Helix-turn-helix transcriptional regulator	NA
UHGV-0134856_22	eggNOG-mapper	2342.SOPEG_1041	NA	NA
UHGV-0134856_23	PHROG	phrog_1588	NA	unknown function
UHGV-0134856_23	UniRef90	UniRef90_A0A7T9SKF3	NA	NA
UHGV-0134856_23	eggNOG-mapper	520999.PROVALCAL_03967	NA	NA
UHGV-0134856_23	Pfam	PF16786	Recombination enhancement, RecA-dependent nuclease	RecA_dep_nuc
UHGV-0134856_23	Structural annotation	PF16786	NA	NA
UHGV-0134856_24	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0134856_24	UniRef90	UniRef90_A0A3L1NH98	NA	NA
UHGV-0134856_24	eggNOG-mapper	1080067.BAZH01000011_gene678	NA	NA
UHGV-0134856_24	Pfam	PF07105	NA	DUF1367
UHGV-0134856_24	Structural annotation	PF07105	NA	NA
UHGV-0134856_25	PHROG	phrog_340	NA	unknown function
UHGV-0134856_25	eggNOG-mapper	1115515.EV102420_14_01080	NA	NA
UHGV-0134856_26	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-0134856_26	eggNOG-mapper	215158.Q858C6_BPE15	NA	NA
UHGV-0134856_27	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0134856_27	UniRef90	UniRef90_UPI000791B943	NA	NA
UHGV-0134856_27	eggNOG-mapper	393305.YE0860	NA	NA
UHGV-0134856_27	Pfam	PF12961	NA	DUF3850
UHGV-0134856_28	PHROG	phrog_8705	NA	unknown function
UHGV-0134856_28	Structural annotation	PF21485, MF_00085, NF003076, COG0231	NA	NA
UHGV-0134856_29	PHROG	phrog_11761	NA	unknown function
UHGV-0134856_29	UniRef90	UniRef90_UPI000BEA4688	ead/Ea22-like family protein	NA
UHGV-0134856_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0134856_30	UniRef90	UniRef90_UPI000CFC55D4	Lar family restriction alleviation protein	NA
UHGV-0134856_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0134856_31	PHROG	phrog_492	NA	unknown function
UHGV-0134856_31	eggNOG-mapper	1147139.A0A0A6Z565_9CAUD	NA	NA
UHGV-0134856_32	PHROG	phrog_1105	DNA polymerase III theta subunit	DNA, RNA and nucleotide metabolism
UHGV-0134856_32	eggNOG-mapper	1080067.BAZH01000011_gene676	NA	NA
UHGV-0134856_32	Structural annotation	PF11686, NF008207	NA	NA
UHGV-0134856_33	PHROG	phrog_4183	NA	unknown function
UHGV-0134856_33	eggNOG-mapper	1080067.BAZH01000011_gene675	NA	NA
UHGV-0134856_33	Structural annotation	PF01475, TIGR03433, COG1695	NA	NA
UHGV-0134856_34	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0134856_34	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0134856_34	UniRef90	UniRef90_A0A443XKP5	DNA helicase	NA
UHGV-0134856_34	eggNOG-mapper	1080067.BAZH01000011_gene674	DnaB-like helicase N terminal domain	NA
UHGV-0134856_34	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0134856_34	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0134856_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0134856_34	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0134856_35	PHROG	phrog_1347	NA	unknown function
UHGV-0134856_35	UniRef90	UniRef90_A0A7Z1F7E6	Helix-turn-helix domain-containing protein	NA
UHGV-0134856_35	eggNOG-mapper	1080067.BAZH01000011_gene673	Helix-turn-helix domain	NA
UHGV-0134856_35	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0134856_35	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0134856_35	Structural annotation	PF13730, MF_01909, NF040939, COG5529	NA	NA
UHGV-0134856_36	PHROG	phrog_2465	NA	unknown function
UHGV-0134856_36	UniRef90	UniRef90_UPI00101F3756	adenylate cyclase	NA
UHGV-0134856_36	eggNOG-mapper	82996.sch_09135	NA	NA
UHGV-0134856_37	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0134856_37	UniRef90	UniRef90_A0A443XKG1	YdaT_toxin domain-containing protein	NA
UHGV-0134856_37	eggNOG-mapper	1080067.BAZH01000011_gene671	Putative bacterial toxin ydaT	NA
UHGV-0134856_37	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0134856_37	Structural annotation	PF06254	NA	NA
UHGV-0134856_38	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0134856_38	UniRef90	UniRef90_A0A7W3BFH1	Helix-turn-helix domain-containing protein	NA
UHGV-0134856_38	eggNOG-mapper	1080067.BAZH01000011_gene670	Helix-turn-helix	NA
UHGV-0134856_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134856_39	UniRef90	UniRef90_A0A455W108	HTH cro/C1-type domain-containing protein	NA
UHGV-0134856_39	eggNOG-mapper	1115515.EV102420_14_01040	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134856_39	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0134856_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0134856_39	Structural annotation	PF21291, MF_00535, NF007257, COG1396	NA	NA
UHGV-0134856_40	PHROG	phrog_2479	NA	unknown function
UHGV-0134856_40	eggNOG-mapper	1080067.BAZH01000011_gene669	NA	NA
UHGV-0134856_41	PHROG	phrog_36277	NA	unknown function
UHGV-0134856_42	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0134856_42	PHROG	phrog_2489	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0134856_42	UniRef90	UniRef90_A0A376FKY2	Exonuclease VIII	NA
UHGV-0134856_42	eggNOG-mapper	1080067.BAZH01000011_gene667	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-0134856_42	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0134856_42	Structural annotation	PF06630, NF007259, COG4712	NA	NA
UHGV-0134856_43	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0134856_43	UniRef90	UniRef90_A0A376F3Q9	Siphovirus Gp157	NA
UHGV-0134856_43	eggNOG-mapper	35703.DQ02_08995	Siphovirus Gp157	NA
UHGV-0134856_43	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0134856_43	Structural annotation	PF05565	NA	NA
UHGV-0134856_44	PHROG	phrog_2482	NA	unknown function
UHGV-0134856_44	eggNOG-mapper	35703.DQ02_09000	NA	NA
UHGV-0134856_45	PHROG	phrog_1266	excisionase	integration and excision
UHGV-0134856_45	UniRef90	UniRef90_A0A7Z1JBG8	NA	NA
UHGV-0134856_45	eggNOG-mapper	1443113.LC20_02243	NA	NA
UHGV-0134856_45	Pfam	PF13986	NA	DUF4224
UHGV-0134856_45	Structural annotation	PF13986	NA	NA
UHGV-0134856_46	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0134856_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0134856_46	UniRef90	UniRef90_A0A376F3Y1	Phage integrase	NA
UHGV-0134856_46	eggNOG-mapper	1127516.H9C152_9CAUD	DNA integration	NA
UHGV-0134856_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134856_46	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA