UHGV-0134867

Genome information

Genome length 38,423 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134867
vOTU ID	vOTU-004654
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_363552
BioSample	SAMN02712088
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.09
Jumbo phage	No

Genome content
Genome length	38,423 bps
GC content	58.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.52%
Average CDS length	569.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134867_2	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0134867_3	PHROG	phrog_14030	NA	unknown function
UHGV-0134867_3	UniRef90	UniRef90_UPI00164AB959	peptidoglycan-binding protein	NA
UHGV-0134867_3	eggNOG-mapper	1095750.HMPREF9970_0318	Putative cell wall binding repeat	NA
UHGV-0134867_3	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0134867_4	PHROG	phrog_13256	NA	unknown function
UHGV-0134867_4	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0134867_6	PHROG	phrog_937	hemolysin	other
UHGV-0134867_6	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0134867_7	eggNOG-mapper	411471.SUBVAR_06976	NA	NA
UHGV-0134867_7	Structural annotation	PF14600	NA	NA
UHGV-0134867_9	UniRef90	UniRef90_A0A411ZUM8	Leucine-rich repeat domain-containing protein	NA
UHGV-0134867_9	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0134867_9	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0134867_9	COG	COG5492	NA	NA
UHGV-0134867_9	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0134867_10	PHROG	phrog_19111	NA	unknown function
UHGV-0134867_10	eggNOG-mapper	1232428.CAVO010000002_gene2342	ATPase involved in DNA repair	NA
UHGV-0134867_10	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0134867_12	Structural annotation	PF08481, NF033814, COG5456	NA	NA
UHGV-0134867_13	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0134867_14	PHROG	phrog_26795	NA	unknown function
UHGV-0134867_14	eggNOG-mapper	997296.PB1_16154	NA	NA
UHGV-0134867_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0134867_15	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0134867_15	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0134867_15	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0134867_15	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0134867_16	PHROG	phrog_13338	NA	unknown function
UHGV-0134867_16	UniRef90	UniRef90_A0A1M6L1P7	Phage-related minor tail protein	NA
UHGV-0134867_16	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0134867_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0134867_16	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0134867_17	Structural annotation	PF11836	NA	NA
UHGV-0134867_18	PHROG	phrog_88	major tail protein	tail
UHGV-0134867_18	UniRef90	UniRef90_A0A174GEX1	Phage major tail protein, phi13 family	NA
UHGV-0134867_18	eggNOG-mapper	411470.RUMGNA_02073	phage major tail protein, phi13 family	NA
UHGV-0134867_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0134867_19	Structural annotation	TIGR01725	NA	NA
UHGV-0134867_20	Structural annotation	PF11367, MF_00632	NA	NA
UHGV-0134867_21	PHROG	phrog_19734	NA	unknown function
UHGV-0134867_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0134867_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0134867_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0134867_23	UniRef90	UniRef90_A0A2V2FJ37	Phage major capsid protein	NA
UHGV-0134867_23	eggNOG-mapper	396034.A6XMJ6_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0134867_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0134867_23	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0134867_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0134867_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0134867_24	KOfam	K06904	NA	NA
UHGV-0134867_24	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0134867_24	UniRef90	UniRef90_A0A3D1VA27	HK97 family phage prohead protease	NA
UHGV-0134867_24	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-0134867_24	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0134867_24	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0134867_24	COG	COG3740	Phage head maturation protease	NA
UHGV-0134867_24	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0134867_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0134867_25	UniRef90	UniRef90_A0A3D1VH02	Phage portal protein	NA
UHGV-0134867_25	eggNOG-mapper	1121423.JONT01000042_gene1421	Phage portal protein, HK97 family	NA
UHGV-0134867_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0134867_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0134867_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0134867_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0134867_26	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0134867_26	UniRef90	UniRef90_A0A1C6JAJ2	Methyltransferase	NA
UHGV-0134867_26	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0134867_26	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0134867_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0134867_26	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0134867_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0134867_27	UniRef90	UniRef90_A0A3D1VAR5	Terminase	NA
UHGV-0134867_27	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0134867_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0134867_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0134867_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0134867_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0134867_27	Structural annotation	PF03354, PF20441, PF05119, MF_04146, TIGR01547, TIGR01558, COG4626, COG3747	NA	NA
UHGV-0134867_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0134867_29	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0134867_29	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0134867_32	Structural annotation	PF20549, MF_00436, NF005100, COG5475	NA	NA
UHGV-0134867_37	PHROG	phrog_38832	NA	unknown function
UHGV-0134867_37	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0134867_37	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0134867_38	PHROG	phrog_3136	NA	unknown function
UHGV-0134867_38	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0134867_38	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0134867_38	Pfam	PF04266	ASCH domain	ASCH
UHGV-0134867_38	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0134867_38	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0134867_41	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134867_41	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0134867_42	Structural annotation	PF10013	NA	NA
UHGV-0134867_43	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0134867_43	PHROG	phrog_27290	NA	unknown function
UHGV-0134867_43	UniRef90	UniRef90_UPI00195A3B6D	ParB N-terminal domain-containing protein	NA
UHGV-0134867_43	eggNOG-mapper	742738.HMPREF9460_04281	ParB-like nuclease domain	NA
UHGV-0134867_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0134867_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0134867_43	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0134867_44	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0134867_44	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0134867_44	UniRef90	UniRef90_A0A845R968	ParA family protein	NA
UHGV-0134867_44	eggNOG-mapper	1226322.HMPREF1545_00097	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0134867_44	Pfam	PF13614	AAA domain	AAA_31
UHGV-0134867_44	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0134867_44	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0134867_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134867_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134867_45	UniRef90	UniRef90_A0A316PJ48	Transcriptional regulator	NA
UHGV-0134867_45	eggNOG-mapper	536233.CLO_1401	transcriptional regulator	NA
UHGV-0134867_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0134867_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134867_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134867_45	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0134867_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0134867_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0134867_46	UniRef90	UniRef90_U2SBV6	DNA helicase	NA
UHGV-0134867_46	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0134867_46	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0134867_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0134867_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-0134867_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0134867_47	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0134867_47	UniRef90	UniRef90_J4WA46	DNA-binding helix-turn-helix protein	NA
UHGV-0134867_47	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0134867_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0134867_47	Structural annotation	PF02002, MF_01909, NF040939, COG5529	NA	NA
UHGV-0134867_49	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0134867_49	UniRef90	UniRef90_A0A1Y4KU10	HTH cro/C1-type domain-containing protein	NA
UHGV-0134867_49	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134867_49	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0134867_49	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0134867_49	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0134867_50	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0134867_51	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134867_51	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0134867_51	UniRef90	UniRef90_UPI00189818F3	helix-turn-helix domain-containing protein	NA
UHGV-0134867_51	eggNOG-mapper	1235802.C823_03240	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134867_51	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134867_51	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134867_51	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0134867_52	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134867_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134867_52	UniRef90	UniRef90_A0A1H6V6K6	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134867_52	eggNOG-mapper	1123302.KB904161_gene1188	Transcriptional	NA
UHGV-0134867_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0134867_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134867_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0134867_52	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0134867_53	eggNOG-mapper	411470.RUMGNA_02091	NA	NA
UHGV-0134867_54	UniRef90	UniRef90_A0A0U3ELM1	PBECR3 domain-containing protein	NA
UHGV-0134867_54	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-0134867_54	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0134867_54	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0134867_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134867_55	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-0134867_56	KOfam	K14059	int; integrase	NA
UHGV-0134867_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0134867_56	UniRef90	UniRef90_A0A212JT52	Putative Integrase family protein	NA
UHGV-0134867_56	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0134867_56	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0134867_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134867_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0134867_56	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0134867_57	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0134867_57	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0134867_58	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0134867_59	PHROG	phrog_16490	NA	unknown function
UHGV-0134867_59	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0134867_62	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0134867_62	Structural annotation	PF10723	NA	NA