UHGV-0134959

Genome information

Genome length 45,557 bps

CDS count 85

Completeness 99.90% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0134959
vOTU ID	vOTU-063082
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367460
BioSample	SAMN03283272
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.57
Jumbo phage	No

Genome content
Genome length	45,557 bps
GC content	36.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	85
CDS density	93.31%
Average CDS length	503.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0134959_1	KOfam	K10254	ohyA, sph; oleate hydratase [EC:4.2.1.53]	NA
UHGV-0134959_1	UniRef90	UniRef90_A0A3B8NWA5	Oleate hydratase (Fragment)	NA
UHGV-0134959_1	eggNOG-mapper	1232449.BAHV02000010_gene2808	MCRA family	NA
UHGV-0134959_1	Pfam	PF06100	MCRA family	MCRA
UHGV-0134959_1	COG	COG4716	Myosin-crossreactive antigen (function unknown)	NA
UHGV-0134959_2	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0134959_5	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0134959_6	PHROG	phrog_16490	NA	unknown function
UHGV-0134959_6	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0134959_7	PHROG	phrog_21718	NA	unknown function
UHGV-0134959_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0134959_8	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0134959_8	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0134959_9	PHROG	phrog_2310	NA	unknown function
UHGV-0134959_10	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0134959_10	Structural annotation	PF16640, NF032891	NA	NA
UHGV-0134959_11	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0134959_11	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0134959_12	Structural annotation	PF10618	NA	NA
UHGV-0134959_13	PHROG	phrog_372	tail protein	tail
UHGV-0134959_13	UniRef90	UniRef90_UPI00103462F4	NA	NA
UHGV-0134959_13	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0134959_13	Pfam	PF05895	NA	DUF859
UHGV-0134959_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0134959_13	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0134959_14	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0134959_14	UniRef90	UniRef90_UPI000C7C59F9	phage tail protein	NA
UHGV-0134959_14	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0134959_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0134959_14	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0134959_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0134959_14	COG	COG4926	Phage-related protein	NA
UHGV-0134959_14	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0134959_15	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0134959_15	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0134959_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0134959_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0134959_16	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0134959_16	UniRef90	UniRef90_A0A6N8H0F9	Phage tail tape measure protein	NA
UHGV-0134959_16	eggNOG-mapper	180332.JTGN01000004_gene2272	Phage tail tape measure protein, TP901 family	NA
UHGV-0134959_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0134959_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0134959_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0134959_16	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0134959_18	PHROG	phrog_881	holin	lysis
UHGV-0134959_18	UniRef90	UniRef90_A0A7Y0HUK7	Holin	NA
UHGV-0134959_18	eggNOG-mapper	326426.Bbr_0318	Putative phage holin Dp-1	NA
UHGV-0134959_18	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0134959_18	Structural annotation	PF16938	NA	NA
UHGV-0134959_19	PHROG	phrog_11037	NA	unknown function
UHGV-0134959_19	UniRef90	UniRef90_A0A2V2EB84	EF-hand domain-containing protein	NA
UHGV-0134959_19	eggNOG-mapper	1235796.C815_00900	NA	NA
UHGV-0134959_19	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0134959_19	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-0134959_22	PHROG	phrog_885	major tail protein	tail
UHGV-0134959_22	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0134959_22	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0134959_22	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0134959_23	Structural annotation	PF11367	NA	NA
UHGV-0134959_24	PHROG	phrog_17977	NA	unknown function
UHGV-0134959_24	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0134959_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0134959_24	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0134959_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0134959_26	UniRef90	UniRef90_A0A0D0SBF1	Phage major capsid protein	NA
UHGV-0134959_26	eggNOG-mapper	1256908.HMPREF0373_00476	NA	NA
UHGV-0134959_26	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0134959_26	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0134959_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0134959_27	eggNOG-mapper	320843.Q4ZBR6_9CAUD	Phage minor structural protein GP20	NA
UHGV-0134959_27	Structural annotation	PF06810	NA	NA
UHGV-0134959_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0134959_28	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0134959_28	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0134959_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0134959_28	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0134959_28	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0134959_30	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0134959_30	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0134959_30	eggNOG-mapper	1280685.AUKC01000004_gene1632	Phage Mu protein F like protein	NA
UHGV-0134959_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0134959_30	COG	COG2369	NA	NA
UHGV-0134959_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0134959_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0134959_31	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0134959_31	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0134959_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0134959_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0134959_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0134959_32	PHROG	phrog_10250	NA	unknown function
UHGV-0134959_32	UniRef90	UniRef90_A0A2N2CXF0	PBSX family phage terminase large subunit	NA
UHGV-0134959_32	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0134959_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0134959_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0134959_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0134959_32	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0134959_36	Structural annotation	PF02001, TIGR01636	NA	NA
UHGV-0134959_46	PHROG	phrog_918	NA	unknown function
UHGV-0134959_46	UniRef90	UniRef90_UPI001D0B68F4	NA	NA
UHGV-0134959_46	eggNOG-mapper	411473.RUMCAL_00361	NA	NA
UHGV-0134959_46	Pfam	PF19791	NA	DUF6275
UHGV-0134959_46	Structural annotation	PF19791	NA	NA
UHGV-0134959_48	eggNOG-mapper	1256908.HMPREF0373_00034	NA	NA
UHGV-0134959_48	Pfam	PF20323	NA	DUF6618
UHGV-0134959_49	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0134959_49	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0134959_49	UniRef90	UniRef90_A0A1Y4SID7	AAA domain-containing protein	NA
UHGV-0134959_49	eggNOG-mapper	500632.CLONEX_01334	AAA domain	NA
UHGV-0134959_49	Pfam	PF13401	AAA domain	AAA_22
UHGV-0134959_49	COG	COG3267	Type II secretory pathway ATPase component GspA/ExeA/MshM	NA
UHGV-0134959_49	Structural annotation	PF05621, PF20436, MF_01407, TIGR03015, COG3267	NA	NA
UHGV-0134959_50	KOfam	K07497	K07497; putative transposase	NA
UHGV-0134959_50	PHROG	phrog_310	transposase	integration and excision
UHGV-0134959_50	UniRef90	UniRef90_A0A1Y4SJJ0	IS481 family transposase	NA
UHGV-0134959_50	eggNOG-mapper	1280680.AUJU01000065_gene3260	Integrase core domain	NA
UHGV-0134959_50	Pfam	PF13565	Homeodomain-like domain	HTH_32
UHGV-0134959_50	Pfam	PF00665	Integrase core domain	rve
UHGV-0134959_50	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0134959_50	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0134959_50	Structural annotation	PF00665, PF13565, NF033594, COG4584	NA	NA
UHGV-0134959_51	UniRef90	UniRef90_UPI001D099FA1	NA	NA
UHGV-0134959_51	Pfam	PF20020	NA	DUF6431
UHGV-0134959_51	COG	COG3464	Transposase	NA
UHGV-0134959_56	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0134959_56	PHROG	phrog_17284	NA	unknown function
UHGV-0134959_56	UniRef90	UniRef90_A0A8B6J6U4	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0134959_56	eggNOG-mapper	996306.SSUR61_1005	C-5 cytosine-specific DNA methylase	NA
UHGV-0134959_56	PADLOC	MTase_II_00147	Type II methyltransferase	RM
UHGV-0134959_56	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0134959_56	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0134959_57	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0134959_57	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0134959_57	UniRef90	UniRef90_A0A412KF70	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0134959_57	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0134959_57	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0134959_57	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0134959_57	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0134959_57	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0134959_57	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0134959_58	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0134959_58	UniRef90	UniRef90_A0A8I0ADW4	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0134959_58	eggNOG-mapper	755731.Clo1100_1616	Phage replisome organizer	NA
UHGV-0134959_58	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0134959_58	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0134959_58	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0134959_58	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0134959_59	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0134959_59	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0134959_59	UniRef90	UniRef90_A0A1V4VEN0	Endodeoxyribonuclease RusA	NA
UHGV-0134959_59	eggNOG-mapper	1095750.HMPREF9970_1673	Endodeoxyribonuclease RusA	NA
UHGV-0134959_59	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0134959_59	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0134959_59	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0134959_60	PHROG	phrog_7566	NA	unknown function
UHGV-0134959_60	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0134959_61	PHROG	phrog_1389	NA	unknown function
UHGV-0134959_61	eggNOG-mapper	883156.HMPREF9282_01223	NA	NA
UHGV-0134959_61	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0134959_62	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0134959_62	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0134959_62	UniRef90	UniRef90_UPI00177D1FCE	single-stranded DNA-binding protein	NA
UHGV-0134959_62	eggNOG-mapper	1545701.LACWKB10_1167	Single-strand binding protein family	NA
UHGV-0134959_62	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0134959_62	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0134959_62	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0134959_62	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0134959_62	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0134959_64	PHROG	phrog_6244	NA	unknown function
UHGV-0134959_64	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0134959_64	Structural annotation	PF05565	NA	NA
UHGV-0134959_65	PHROG	phrog_14970	NA	unknown function
UHGV-0134959_65	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0134959_65	eggNOG-mapper	697329.Rumal_1121	double-strand break repair protein	NA
UHGV-0134959_65	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0134959_65	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0134959_68	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0134959_68	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0134959_68	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0134959_69	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134959_69	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0134959_69	UniRef90	UniRef90_A0A5F0MF03	Transcriptional regulator	NA
UHGV-0134959_69	eggNOG-mapper	272623.L80045	Helix-turn-helix domain	NA
UHGV-0134959_69	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0134959_69	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134959_71	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0134959_82	PHROG	phrog_3754	NA	unknown function
UHGV-0134959_82	eggNOG-mapper	1278311.AUAL01000001_gene36	NA	NA
UHGV-0134959_83	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0134959_83	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0134959_83	UniRef90	UniRef90_UPI001873D032	helix-turn-helix domain-containing protein	NA
UHGV-0134959_83	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0134959_83	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0134959_83	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0134959_83	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0134959_85	KOfam	K14059	int; integrase	NA
UHGV-0134959_85	PHROG	phrog_1	integrase	integration and excision
UHGV-0134959_85	UniRef90	UniRef90_A0A412PAQ5	Site-specific integrase	NA
UHGV-0134959_85	eggNOG-mapper	1123263.AUKY01000072_gene2117	Phage integrase family	NA
UHGV-0134959_85	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0134959_85	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0134959_85	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA