UHGV-0135012

Genome information

Genome length 43,705 bps

CDS count 76

Completeness 65.98% (medium-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135012
vOTU ID	vOTU-018736
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_384760
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.98% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.28
Jumbo phage	No

Genome content
Genome length	43,705 bps
GC content	39.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	86.36%
Average CDS length	498.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135012_1	eggNOG-mapper	742727.HMPREF9447_04901	NA	NA
UHGV-0135012_3	UniRef90	UniRef90_A0A374URU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0135012_3	eggNOG-mapper	1121100.JCM6294_1580	NA	NA
UHGV-0135012_3	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0135012_4	Structural annotation	PF13545	NA	NA
UHGV-0135012_6	eggNOG-mapper	411477.PARMER_02101	NA	NA
UHGV-0135012_8	UniRef90	UniRef90_UPI000E54150D	helix-turn-helix domain-containing protein	NA
UHGV-0135012_8	eggNOG-mapper	742727.HMPREF9447_04898	Helix-turn-helix domain	NA
UHGV-0135012_8	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0135012_8	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0135012_8	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0135012_9	eggNOG-mapper	1268240.ATFI01000007_gene444	NA	NA
UHGV-0135012_10	PHROG	phrog_4074	NA	unknown function
UHGV-0135012_10	UniRef90	UniRef90_V7HYF3	Putative bacteriophage protein	NA
UHGV-0135012_10	eggNOG-mapper	742767.HMPREF9456_02400	NA	NA
UHGV-0135012_12	PHROG	phrog_200	lipoprotein	other
UHGV-0135012_12	UniRef90	UniRef90_UPI000E5006F6	SPFH domain-containing protein	NA
UHGV-0135012_12	eggNOG-mapper	742727.HMPREF9447_04889	SPFH Band 7 PHB domain protein	NA
UHGV-0135012_12	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0135012_12	Structural annotation	PF01145, MF_01562, TIGR01932, COG0330	NA	NA
UHGV-0135012_13	PHROG	phrog_11581	NA	unknown function
UHGV-0135012_13	eggNOG-mapper	470145.BACCOP_01179	NA	NA
UHGV-0135012_14	PHROG	phrog_11581	NA	unknown function
UHGV-0135012_14	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-0135012_15	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0135012_15	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0135012_15	UniRef90	UniRef90_A0A1Y3YRG0	Reverse transcriptase	NA
UHGV-0135012_15	eggNOG-mapper	457424.BFAG_02440	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0135012_15	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0135012_15	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0135012_15	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0135012_15	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0135012_16	PHROG	phrog_19665	NA	unknown function
UHGV-0135012_16	eggNOG-mapper	1121098.HMPREF1534_01114	NA	NA
UHGV-0135012_16	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0135012_18	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0135012_18	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135012_18	UniRef90	UniRef90_A0A414Q837	Recombinase RecT	NA
UHGV-0135012_18	eggNOG-mapper	1401067.HMPREF0872_03475	Recombinase, phage RecT family	NA
UHGV-0135012_18	Pfam	PF03837	RecT family	RecT
UHGV-0135012_18	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0135012_18	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0135012_18	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0135012_19	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0135012_19	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135012_19	UniRef90	UniRef90_A0A414Q850	YqaJ domain-containing protein	NA
UHGV-0135012_19	eggNOG-mapper	1121100.JCM6294_520	YqaJ-like viral recombinase domain	NA
UHGV-0135012_19	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0135012_19	Structural annotation	TIGR03033, COG5377	NA	NA
UHGV-0135012_20	PHROG	phrog_36980	NA	unknown function
UHGV-0135012_20	eggNOG-mapper	1268240.ATFI01000008_gene2556	NA	NA
UHGV-0135012_21	PHROG	phrog_19572	NA	unknown function
UHGV-0135012_21	UniRef90	UniRef90_UPI000E46A408	NA	NA
UHGV-0135012_21	eggNOG-mapper	1227276.HMPREF9148_02498	COG NOG14445 non supervised orthologous group	NA
UHGV-0135012_21	Pfam	PF14902	NA	DUF4494
UHGV-0135012_21	Structural annotation	PF14902, COG2157	NA	NA
UHGV-0135012_22	AcrCatalog	cluster_25385	NA	NA
UHGV-0135012_24	eggNOG-mapper	411901.BACCAC_02347	NA	NA
UHGV-0135012_26	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0135012_26	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135012_26	UniRef90	UniRef90_UPI000E48ADF6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0135012_26	eggNOG-mapper	435590.BVU_2854	Endodeoxyribonuclease RusA	NA
UHGV-0135012_26	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0135012_26	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0135012_27	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0135012_27	UniRef90	UniRef90_UPI001F00F70B	NA	NA
UHGV-0135012_27	eggNOG-mapper	1121100.JCM6294_532	DnaD domain protein	NA
UHGV-0135012_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135012_27	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0135012_28	PHROG	phrog_29547	NA	unknown function
UHGV-0135012_28	UniRef90	UniRef90_A0A6L5XC99	HTH araC/xylS-type domain-containing protein	NA
UHGV-0135012_28	eggNOG-mapper	1122985.HMPREF1991_02244	NA	NA
UHGV-0135012_28	Pfam	PF20338	NA	DUF6633
UHGV-0135012_28	Structural annotation	PF20338	NA	NA
UHGV-0135012_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0135012_31	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0135012_31	UniRef90	UniRef90_UPI001E2B78BF	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0135012_31	eggNOG-mapper	1121098.HMPREF1534_01082	C-5 cytosine-specific DNA methylase	NA
UHGV-0135012_31	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0135012_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0135012_31	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0135012_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0135012_31	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0135012_32	eggNOG-mapper	1122971.BAME01000058_gene4471	NA	NA
UHGV-0135012_32	Structural annotation	PF18275	NA	NA
UHGV-0135012_34	UniRef90	UniRef90_A0A7K0JNA1	NA	NA
UHGV-0135012_34	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0135012_37	PHROG	phrog_28300	NA	unknown function
UHGV-0135012_39	PHROG	phrog_12005	NA	unknown function
UHGV-0135012_42	PHROG	phrog_22725	NA	unknown function
UHGV-0135012_42	eggNOG-mapper	476272.RUMHYD_03319	NA	NA
UHGV-0135012_44	eggNOG-mapper	657309.BXY_08540	NA	NA
UHGV-0135012_45	PHROG	phrog_874	NA	unknown function
UHGV-0135012_45	eggNOG-mapper	1121098.HMPREF1534_01095	NA	NA
UHGV-0135012_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0135012_46	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0135012_46	eggNOG-mapper	1122971.BAME01000163_gene6622	NA	NA
UHGV-0135012_46	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0135012_47	eggNOG-mapper	536233.CLO_0512	NA	NA
UHGV-0135012_48	Structural annotation	PF08928	NA	NA
UHGV-0135012_49	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0135012_49	UniRef90	UniRef90_UPI0011DCE920	NA	NA
UHGV-0135012_49	eggNOG-mapper	762982.HMPREF9442_01214	NA	NA
UHGV-0135012_49	Pfam	PF14359	NA	DUF4406
UHGV-0135012_49	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0135012_51	PHROG	phrog_1818	NA	unknown function
UHGV-0135012_51	UniRef90	UniRef90_UPI001230C7A4	HAD domain-containing protein	NA
UHGV-0135012_51	eggNOG-mapper	1458859.A0A088C4I8_9CAUD	NA	NA
UHGV-0135012_51	Pfam	PF18143	HAD domain in Swiss Army Knife RNA repair proteins	HAD_SAK_2
UHGV-0135012_51	Structural annotation	PF18143, NF003937, COG0241	NA	NA
UHGV-0135012_52	Structural annotation	PF11169	NA	NA
UHGV-0135012_53	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0135012_53	eggNOG-mapper	762982.HMPREF9442_01206	NA	NA
UHGV-0135012_54	PHROG	phrog_38431	NA	unknown function
UHGV-0135012_54	UniRef90	UniRef90_R5U340	Conserved domain protein	NA
UHGV-0135012_54	eggNOG-mapper	762982.HMPREF9442_01205	NA	NA
UHGV-0135012_55	PHROG	phrog_34053	NA	unknown function
UHGV-0135012_56	PHROG	phrog_28898	NA	unknown function
UHGV-0135012_56	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0135012_56	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0135012_56	Structural annotation	PF10781	NA	NA
UHGV-0135012_57	PHROG	phrog_31654	NA	unknown function
UHGV-0135012_57	eggNOG-mapper	762968.HMPREF9441_00554	NA	NA
UHGV-0135012_58	PHROG	phrog_16490	NA	unknown function
UHGV-0135012_58	UniRef90	UniRef90_A0A7M1RSH1	Outer capsid protein/viral fiber	NA
UHGV-0135012_58	eggNOG-mapper	762968.HMPREF9441_00555	NA	NA
UHGV-0135012_59	UniRef90	UniRef90_A0A8D9UI10	Chromosomal replication initiator protein	NA
UHGV-0135012_59	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0135012_59	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0135012_60	PHROG	phrog_26448	NA	unknown function
UHGV-0135012_60	eggNOG-mapper	762984.HMPREF9445_00190	NA	NA
UHGV-0135012_60	Pfam	PF20647	NA	DUF6808
UHGV-0135012_60	Structural annotation	PF20647	NA	NA
UHGV-0135012_62	PHROG	phrog_20787	virion structural protein	head and packaging
UHGV-0135012_62	eggNOG-mapper	449673.BACSTE_02041	Leucine-rich repeat (LRR) protein	NA
UHGV-0135012_62	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0135012_64	Structural annotation	PF14607, MF_01372, NF038393	NA	NA
UHGV-0135012_65	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135012_65	PHROG	phrog_435	endolysin	lysis
UHGV-0135012_65	UniRef90	UniRef90_A0A414Q7Y1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135012_65	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0135012_65	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0135012_65	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135012_65	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0135012_67	UniRef90	UniRef90_UPI000E53ECB8	phage holin family protein	NA
UHGV-0135012_67	eggNOG-mapper	1121100.JCM6294_559	NA	NA
UHGV-0135012_67	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135012_67	Structural annotation	PF05105, NF035928, COG4824	NA	NA
UHGV-0135012_68	eggNOG-mapper	272559.BF9343_2359	NA	NA
UHGV-0135012_70	eggNOG-mapper	693979.Bache_2416	nuclear chromosome segregation	NA
UHGV-0135012_70	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0135012_71	eggNOG-mapper	742727.HMPREF9447_04856	NA	NA
UHGV-0135012_72	PHROG	phrog_38044	NA	unknown function
UHGV-0135012_72	UniRef90	UniRef90_A0A416VT64	Polymer-forming cytoskeletal protein	NA
UHGV-0135012_72	eggNOG-mapper	1121100.JCM6294_565	Phage minor structural protein	NA
UHGV-0135012_72	COG	COG4926	Phage-related protein	NA
UHGV-0135012_72	Structural annotation	PF14594, PF04862, PF18141, TIGR01665, NF038128, COG4926	NA	NA
UHGV-0135012_73	eggNOG-mapper	742727.HMPREF9447_04845	NA	NA
UHGV-0135012_73	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0135012_75	Structural annotation	PF09202, MF_01819, NF038251, COG1846	NA	NA