UHGV-0135087

Genome information

Genome length 28,671 bps

CDS count 39

Completeness 75.15% (medium-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135087
vOTU ID	vOTU-021297
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365726
BioSample	SAMN03283282
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.98
Jumbo phage	No

Genome content
Genome length	28,671 bps
GC content	28.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	90.01%
Average CDS length	664.00 bps
tRNA count	9
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135087_4	UniRef90	UniRef90_UPI001407F823	NA	NA
UHGV-0135087_4	eggNOG-mapper	445971.ANASTE_00721	NA	NA
UHGV-0135087_4	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0135087_5	PHROG	phrog_13046	NA	unknown function
UHGV-0135087_5	Structural annotation	PF20387	NA	NA
UHGV-0135087_7	PHROG	phrog_267	major head protein	head and packaging
UHGV-0135087_7	eggNOG-mapper	78344.BIGA_0457	NA	NA
UHGV-0135087_7	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135087_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0135087_9	eggNOG-mapper	445971.ANASTE_00716	NA	NA
UHGV-0135087_9	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0135087_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135087_12	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0135087_12	UniRef90	UniRef90_A0A843HPA6	Terminase family protein	NA
UHGV-0135087_12	eggNOG-mapper	1408437.JNJN01000002_gene1397	Phage terminase large subunit	NA
UHGV-0135087_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0135087_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135087_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135087_13	PHROG	phrog_2412	NA	unknown function
UHGV-0135087_13	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0135087_13	eggNOG-mapper	457398.HMPREF0326_03020	NA	NA
UHGV-0135087_15	Structural annotation	PF15456	NA	NA
UHGV-0135087_19	PHROG	phrog_4601	NA	unknown function
UHGV-0135087_20	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0135087_20	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0135087_20	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0135087_20	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0135087_20	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0135087_20	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0135087_20	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0135087_22	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0135087_22	UniRef90	UniRef90_A0A1V5ZYJ7	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0135087_22	eggNOG-mapper	742767.HMPREF9456_00725	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0135087_22	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0135087_22	COG	COG0338	DNA-adenine methylase	NA
UHGV-0135087_22	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0135087_24	Pfam	PF04570	zinc-finger of the FCS-type, C2-C2	zf-FLZ
UHGV-0135087_26	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135087_26	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135087_26	UniRef90	UniRef90_A0A350H2L8	Single-stranded DNA-binding protein	NA
UHGV-0135087_26	eggNOG-mapper	720554.Clocl_4133	Single-stranded DNA-binding protein	NA
UHGV-0135087_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135087_26	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135087_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135087_26	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135087_26	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0135087_28	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0135087_28	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0135087_28	Structural annotation	PF05772	NA	NA
UHGV-0135087_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135087_29	UniRef90	UniRef90_A0A350H2L7	YqaJ domain-containing protein	NA
UHGV-0135087_29	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0135087_29	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0135087_29	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0135087_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0135087_29	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0135087_30	eggNOG-mapper	1163671.JAGI01000002_gene1275	NA	NA
UHGV-0135087_31	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135087_31	UniRef90	UniRef90_UPI000F63F93F	ERF family protein	NA
UHGV-0135087_31	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0135087_31	Pfam	PF04404	ERF superfamily	ERF
UHGV-0135087_31	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0135087_33	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135087_33	UniRef90	UniRef90_UPI000B1808B0	conserved phage C-terminal domain-containing protein	NA
UHGV-0135087_33	eggNOG-mapper	469604.HMPREF0946_00822	Transcriptional regulator	NA
UHGV-0135087_33	Pfam	PF19808	NA	DUF6291
UHGV-0135087_33	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0135087_33	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0135087_33	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0135087_33	Structural annotation	PF09524, PF19808, TIGR02220	NA	NA
UHGV-0135087_35	PHROG	phrog_989	NA	unknown function
UHGV-0135087_35	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0135087_36	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0135087_36	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0135087_36	UniRef90	UniRef90_UPI00195906B3	helix-turn-helix domain-containing protein	NA
UHGV-0135087_36	eggNOG-mapper	1003200.AXXA_04918	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135087_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135087_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135087_36	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0135087_37	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0135087_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135087_37	UniRef90	UniRef90_A0A353JBB9	HTH cro/C1-type domain-containing protein	NA
UHGV-0135087_37	eggNOG-mapper	268407.PWYN_13630	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135087_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0135087_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135087_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135087_37	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0135087_39	KOfam	K14059	int; integrase	NA
UHGV-0135087_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0135087_39	UniRef90	UniRef90_R7IG47	Putative phage integrase	NA
UHGV-0135087_39	eggNOG-mapper	1178537.BA1_12149	Belongs to the 'phage' integrase family	NA
UHGV-0135087_39	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135087_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135087_39	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA