UHGV-0135100

Genome information

Genome length 34,581 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135100
vOTU ID	vOTU-077579
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370369
BioSample	SAMN03279760
Country	Singapore
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.6
Jumbo phage	No

Genome content
Genome length	34,581 bps
GC content	45.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	90.89%
Average CDS length	503.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135100_1	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0135100_1	UniRef90	UniRef90_A0A1I5Q101	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135100_1	eggNOG-mapper	1123298.KB904063_gene620	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0135100_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135100_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135100_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0135100_3	PHROG	phrog_9607	NA	unknown function
UHGV-0135100_4	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0135100_4	UniRef90	UniRef90_UPI001C119429	NA	NA
UHGV-0135100_4	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0135100_4	Structural annotation	PF11195	NA	NA
UHGV-0135100_5	PHROG	phrog_7338	NA	unknown function
UHGV-0135100_5	UniRef90	UniRef90_A0A1E7RZD4	Helix-turn-helix domain protein	NA
UHGV-0135100_5	eggNOG-mapper	903814.ELI_3233	Helix-turn-helix domain	NA
UHGV-0135100_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0135100_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0135100_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0135100_6	UniRef90	UniRef90_A0A6N7WLV2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0135100_6	eggNOG-mapper	903814.ELI_3131	sulfate reduction	NA
UHGV-0135100_6	PADLOC	SspD_00001	SspD	SSP
UHGV-0135100_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0135100_6	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0135100_7	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0135100_7	PHROG	phrog_200	lipoprotein	other
UHGV-0135100_7	UniRef90	UniRef90_A0A317S093	SPFH domain-containing protein	NA
UHGV-0135100_7	eggNOG-mapper	1410631.JHWZ01000006_gene297	prohibitin homologues	NA
UHGV-0135100_7	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0135100_7	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0135100_7	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0135100_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0135100_12	UniRef90	UniRef90_UPI001D06CA07	siphovirus Gp157 family protein	NA
UHGV-0135100_12	eggNOG-mapper	903814.ELI_1272	Siphovirus Gp157	NA
UHGV-0135100_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0135100_12	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0135100_13	PHROG	phrog_14970	NA	unknown function
UHGV-0135100_13	UniRef90	UniRef90_UPI00164BFA28	Rad52/Rad22 family DNA repair protein	NA
UHGV-0135100_13	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0135100_13	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0135100_13	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0135100_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135100_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135100_14	UniRef90	UniRef90_A0A317RBG1	Single-stranded DNA-binding protein	NA
UHGV-0135100_14	eggNOG-mapper	903814.ELI_4586	Single-stranded DNA-binding protein	NA
UHGV-0135100_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135100_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135100_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135100_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135100_14	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0135100_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0135100_15	UniRef90	UniRef90_UPI0013016018	DnaD domain protein	NA
UHGV-0135100_15	eggNOG-mapper	1329516.JPST01000018_gene2628	DnaD domain protein	NA
UHGV-0135100_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135100_15	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0135100_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0135100_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0135100_16	UniRef90	UniRef90_UPI001D155B43	ATP-binding protein	NA
UHGV-0135100_16	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0135100_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0135100_16	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0135100_16	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0135100_16	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0135100_18	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0135100_18	eggNOG-mapper	552398.HMPREF0866_01622	NA	NA
UHGV-0135100_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0135100_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135100_19	UniRef90	UniRef90_A0A7X8VDG6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0135100_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0135100_20	UniRef90	UniRef90_UPI001D06A5C4	helix-turn-helix transcriptional regulator	NA
UHGV-0135100_22	UniRef90	UniRef90_A0A6N7WVF3	Restriction endonuclease subunit S	NA
UHGV-0135100_26	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0135100_26	UniRef90	UniRef90_A0A0U2WUA4	Phage-related protein	NA
UHGV-0135100_26	eggNOG-mapper	588581.Cpap_1500	NA	NA
UHGV-0135100_27	UniRef90	UniRef90_UPI001D0727C3	Lar family restriction alleviation protein	NA
UHGV-0135100_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0135100_28	UniRef90	UniRef90_UPI00155898A3	NA	NA
UHGV-0135100_30	PHROG	phrog_2164	NA	unknown function
UHGV-0135100_31	UniRef90	UniRef90_UPI001EDCAABA	NA	NA
UHGV-0135100_33	eggNOG-mapper	411902.CLOBOL_05639	NA	NA
UHGV-0135100_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135100_36	UniRef90	UniRef90_UPI001D08678F	NA	NA
UHGV-0135100_36	eggNOG-mapper	903814.ELI_1292	NA	NA
UHGV-0135100_36	Pfam	PF07374	NA	DUF1492
UHGV-0135100_36	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0135100_37	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0135100_37	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0135100_37	UniRef90	UniRef90_A0A1V0LN92	Methyltransferase	NA
UHGV-0135100_37	eggNOG-mapper	665956.HMPREF1032_00128	DNA methylase	NA
UHGV-0135100_37	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0135100_37	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0135100_37	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0135100_37	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0135100_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0135100_38	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135100_38	UniRef90	UniRef90_UPI000B837ED3	HNH endonuclease	NA
UHGV-0135100_38	eggNOG-mapper	358681.BBR47_29120	HNH nucleases	NA
UHGV-0135100_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135100_38	Structural annotation	TIGR02646	NA	NA
UHGV-0135100_39	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0135100_39	UniRef90	UniRef90_A0A1I5SE34	Phage terminase, small subunit	NA
UHGV-0135100_39	eggNOG-mapper	272626.lin2580	Phage terminase, small subunit	NA
UHGV-0135100_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0135100_39	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135100_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135100_40	UniRef90	UniRef90_A0A1I5SDW0	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135100_40	eggNOG-mapper	913865.DOT_5636	Phage Terminase	NA
UHGV-0135100_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135100_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135100_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135100_40	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0135100_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135100_41	UniRef90	UniRef90_A0A1I5SDS6	Phage portal protein, HK97 family	NA
UHGV-0135100_41	eggNOG-mapper	1497679.EP56_05720	Phage portal protein	NA
UHGV-0135100_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135100_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0135100_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135100_41	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0135100_42	KOfam	K06904	NA	NA
UHGV-0135100_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0135100_42	UniRef90	UniRef90_UPI00148BFFBC	HK97 family phage prohead protease	NA
UHGV-0135100_42	eggNOG-mapper	1497679.EP56_05725	Caudovirus prohead serine protease	NA
UHGV-0135100_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0135100_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0135100_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0135100_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0135100_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135100_43	UniRef90	UniRef90_A0A1I5SDK8	Phage major capsid protein, HK97 family	NA
UHGV-0135100_43	eggNOG-mapper	386043.lwe1225	Phage capsid family	NA
UHGV-0135100_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135100_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135100_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135100_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135100_44	PHROG	phrog_2550	NA	unknown function
UHGV-0135100_44	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0135100_44	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0135100_44	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0135100_45	PHROG	phrog_19734	NA	unknown function
UHGV-0135100_45	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0135100_45	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0135100_45	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135100_46	PHROG	phrog_78	tail terminator	connector
UHGV-0135100_46	eggNOG-mapper	33035.JPJF01000039_gene276	NA	NA
UHGV-0135100_46	Structural annotation	PF05657	NA	NA
UHGV-0135100_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135100_47	UniRef90	UniRef90_UPI0013146196	HK97 gp10 family phage protein	NA
UHGV-0135100_47	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0135100_47	Structural annotation	TIGR01725	NA	NA
UHGV-0135100_48	PHROG	phrog_88	major tail protein	tail
UHGV-0135100_48	UniRef90	UniRef90_A0A1I5SD91	Phage major tail protein, phi13 family	NA
UHGV-0135100_48	eggNOG-mapper	903814.ELI_1304	phage major tail protein, phi13 family	NA
UHGV-0135100_48	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0135100_48	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135100_48	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0135100_50	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0135100_50	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0135100_50	UniRef90	UniRef90_A0A1I5SCZ6	Peptidase family M23	NA
UHGV-0135100_50	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0135100_50	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0135100_50	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0135100_50	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0135100_51	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135100_51	UniRef90	UniRef90_A0A1E7S591	Phage tail protein	NA
UHGV-0135100_51	eggNOG-mapper	903814.ELI_1308	Phage tail protein	NA
UHGV-0135100_51	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0135100_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135100_51	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0135100_54	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-0135100_54	UniRef90	UniRef90_A0A0U2WUF0	Phage-related protein	NA
UHGV-0135100_54	eggNOG-mapper	903814.ELI_3195	NA	NA
UHGV-0135100_54	Structural annotation	PF21567	NA	NA
UHGV-0135100_55	PHROG	phrog_538	minor tail protein	tail
UHGV-0135100_55	UniRef90	UniRef90_A0A0U2VKZ3	Phage-related protein	NA
UHGV-0135100_55	eggNOG-mapper	903814.ELI_1314	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0135100_55	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0135100_55	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0135100_56	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0135100_56	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0135100_56	eggNOG-mapper	903814.ELI_1315	Collagen triple helix repeat (20 copies)	NA
UHGV-0135100_56	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0135100_56	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0135100_59	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0135100_60	PHROG	phrog_4105	NA	unknown function
UHGV-0135100_60	eggNOG-mapper	1139219.I569_00245	NA	NA
UHGV-0135100_61	PHROG	phrog_1129	holin	lysis
UHGV-0135100_61	UniRef90	UniRef90_A0A0U3FEU3	Phage holin	NA
UHGV-0135100_61	eggNOG-mapper	903814.ELI_1320	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0135100_61	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0135100_62	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135100_62	PHROG	phrog_435	endolysin	lysis
UHGV-0135100_62	UniRef90	UniRef90_A0A0U3FFT9	Phage-related ytic enzyme	NA
UHGV-0135100_62	eggNOG-mapper	903814.ELI_3187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135100_62	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0135100_62	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135100_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135100_63	UniRef90	UniRef90_A0A416CBM9	C2H2-type domain-containing protein	NA