UHGV-0135101

Genome information

Genome length 32,470 bps

CDS count 46

Completeness 83.39% (medium-quality)

geNomad score 0.9612

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135101
vOTU ID	vOTU-024542
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370371
BioSample	SAMN03279760
Country	Singapore
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9612
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.86
Jumbo phage	No

Genome content
Genome length	32,470 bps
GC content	43.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.28%
Average CDS length	647.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135101_1	KOfam	K14059	int; integrase	NA
UHGV-0135101_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0135101_1	UniRef90	UniRef90_A0A1I5LYE5	Site-specific recombinase XerD	NA
UHGV-0135101_1	eggNOG-mapper	903814.ELI_3152	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0135101_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0135101_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135101_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135101_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0135101_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0135101_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0135101_2	UniRef90	UniRef90_S1R1M7	Exonuclease domain-containing protein	NA
UHGV-0135101_2	eggNOG-mapper	1121864.OMO_01137	Exonuclease	NA
UHGV-0135101_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0135101_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0135101_2	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0135101_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0135101_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0135101_3	UniRef90	UniRef90_A0A1I5LXD8	Helix-turn-helix domain-containing protein	NA
UHGV-0135101_3	eggNOG-mapper	483218.BACPEC_00238	NA	NA
UHGV-0135101_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135101_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0135101_3	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0135101_3	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0135101_5	UniRef90	UniRef90_A0A1I5LXP2	Helix-turn-helix domain-containing protein	NA
UHGV-0135101_5	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0135101_6	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0135101_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0135101_10	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0135101_10	UniRef90	UniRef90_A0A1I5LZA0	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135101_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135101_10	COG	COG0150	Phosphoribosylaminoimidazole (AIR) synthetase	NA
UHGV-0135101_11	KOfam	K04088	hflK; modulator of FtsH protease HflK	NA
UHGV-0135101_11	PHROG	phrog_200	lipoprotein	other
UHGV-0135101_11	UniRef90	UniRef90_A0A1I5LXX0	SPFH domain, Band 7 family protein	NA
UHGV-0135101_11	eggNOG-mapper	511680.BUTYVIB_00242	SPFH domain Band 7 family	NA
UHGV-0135101_11	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0135101_11	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0135101_11	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0135101_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135101_13	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0135101_13	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0135101_13	Structural annotation	PF21578	NA	NA
UHGV-0135101_15	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0135101_15	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0135101_15	UniRef90	UniRef90_UPI001D13CBA6	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0135101_15	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0135101_15	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0135101_15	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0135101_15	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0135101_15	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0135101_19	KOfam	K03700	recU; recombination protein U	NA
UHGV-0135101_19	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135101_19	UniRef90	UniRef90_A0A1I5LYZ6	Holliday junction resolvase RecU	NA
UHGV-0135101_19	eggNOG-mapper	411483.FAEPRAA2165_01882	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0135101_19	Pfam	PF03838	Recombination protein U	RecU
UHGV-0135101_19	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0135101_19	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0135101_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135101_20	UniRef90	UniRef90_A0A7G9W8C4	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0135101_20	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0135101_20	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0135101_20	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0135101_21	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0135101_21	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0135101_21	UniRef90	UniRef90_A0A1I5M0A4	mRNA interferase HicA	NA
UHGV-0135101_21	eggNOG-mapper	877420.ATVW01000025_gene1039	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0135101_21	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0135101_21	Structural annotation	PF07927	NA	NA
UHGV-0135101_22	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0135101_22	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0135101_22	UniRef90	UniRef90_A0A1I5LYR1	Predicted nuclease of the RNAse H fold, HicB family	NA
UHGV-0135101_22	eggNOG-mapper	1120998.AUFC01000014_gene1700	NA	NA
UHGV-0135101_22	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0135101_22	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0135101_22	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0135101_23	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0135101_23	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0135101_23	UniRef90	UniRef90_A0A1I5LZB2	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0135101_23	eggNOG-mapper	1095749.HMPREF1052_2224	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0135101_23	PADLOC	MTase_II_00054	Type II methyltransferase	RM
UHGV-0135101_23	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0135101_23	COG	COG3392	Adenine-specific DNA methylase	NA
UHGV-0135101_25	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0135101_25	UniRef90	UniRef90_A0A1I5LZF7	Phage terminase, small subunit	NA
UHGV-0135101_25	eggNOG-mapper	272626.lin2580	Phage terminase, small subunit	NA
UHGV-0135101_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0135101_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135101_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135101_26	UniRef90	UniRef90_A0A1I5LZ70	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135101_26	eggNOG-mapper	913865.DOT_5636	Phage Terminase	NA
UHGV-0135101_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135101_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135101_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135101_26	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0135101_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135101_27	UniRef90	UniRef90_A0A1I5LZ27	Phage portal protein, HK97 family	NA
UHGV-0135101_27	eggNOG-mapper	1497679.EP56_05720	Phage portal protein	NA
UHGV-0135101_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135101_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0135101_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135101_27	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0135101_28	KOfam	K06904	NA	NA
UHGV-0135101_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0135101_28	UniRef90	UniRef90_UPI0004931215	HK97 family phage prohead protease	NA
UHGV-0135101_28	eggNOG-mapper	1232453.BAIF02000028_gene2722	Phage prohead protease, HK97 family	NA
UHGV-0135101_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0135101_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0135101_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0135101_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0135101_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135101_29	UniRef90	UniRef90_A0A1I5M0W6	Phage major capsid protein, HK97 family	NA
UHGV-0135101_29	eggNOG-mapper	1497679.EP56_05730	Phage capsid family	NA
UHGV-0135101_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135101_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135101_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135101_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135101_30	eggNOG-mapper	768704.Desmer_0986	Carbohydrate binding domain X2	NA
UHGV-0135101_30	COG	COG2319	WD40 repeat	NA
UHGV-0135101_31	PHROG	phrog_2550	NA	unknown function
UHGV-0135101_31	UniRef90	UniRef90_A0AI13	Conserved phage-related protein	NA
UHGV-0135101_31	eggNOG-mapper	386043.lwe1227	NA	NA
UHGV-0135101_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0135101_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0135101_32	UniRef90	UniRef90_A0A1I5M152	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0135101_32	eggNOG-mapper	1121428.DESHY_20140___1	head-tail adaptor	NA
UHGV-0135101_32	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0135101_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0135101_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135101_33	UniRef90	UniRef90_UPI001748A5D5	HK97 gp10 family phage protein	NA
UHGV-0135101_33	eggNOG-mapper	1497679.EP56_05750	NA	NA
UHGV-0135101_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0135101_34	PHROG	phrog_78	tail terminator	connector
UHGV-0135101_34	UniRef90	UniRef90_B7GIN5	Phage related protein	NA
UHGV-0135101_34	eggNOG-mapper	243164.DET1081	NA	NA
UHGV-0135101_34	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0135101_35	PHROG	phrog_88	major tail protein	tail
UHGV-0135101_35	UniRef90	UniRef90_A0A1I5M096	Phage major tail protein, phi13 family	NA
UHGV-0135101_35	eggNOG-mapper	1497679.EP56_05760	phage tail protein	NA
UHGV-0135101_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135101_35	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0135101_36	PHROG	phrog_709	NA	unknown function
UHGV-0135101_36	UniRef90	UniRef90_A0A0D6DV15	Prophage pi2 protein 40	NA
UHGV-0135101_36	eggNOG-mapper	1121105.ATXL01000027_gene752	NA	NA
UHGV-0135101_36	Structural annotation	PF11836	NA	NA
UHGV-0135101_37	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0135101_37	UniRef90	UniRef90_A0A1I5LZZ0	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0135101_37	eggNOG-mapper	386043.lwe1234	Phage-related minor tail protein	NA
UHGV-0135101_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135101_37	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0135101_37	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0135101_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135101_38	UniRef90	UniRef90_A0A1H0WHV5	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0135101_38	eggNOG-mapper	562981.HMPREF0428_00971	phage tail	NA
UHGV-0135101_38	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0135101_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135101_38	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0135101_39	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0135101_39	UniRef90	UniRef90_A0A6N2ZS53	Prophage endopeptidase tail	NA
UHGV-0135101_39	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0135101_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135101_39	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135101_39	COG	COG4926	Phage-related protein	NA
UHGV-0135101_39	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135101_40	PHROG	phrog_19280	NA	unknown function
UHGV-0135101_40	UniRef90	UniRef90_A0A6N2ZND8	BppU_N domain-containing protein	NA
UHGV-0135101_40	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0135101_40	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0135101_41	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0135101_41	UniRef90	UniRef90_A0A2A5T8P9	Collagen-like protein	NA
UHGV-0135101_41	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0135101_41	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0135101_41	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0135101_42	eggNOG-mapper	33035.JPJF01000093_gene2235	Collagen triple helix repeat (20 copies)	NA
UHGV-0135101_42	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0135101_45	PHROG	phrog_21765	NA	unknown function
UHGV-0135101_45	eggNOG-mapper	661087.HMPREF1008_00877	Collagen triple helix repeat (20 copies)	NA
UHGV-0135101_45	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0135101_46	COG	COG4824	Phage-related holin (Lysis protein)	NA