UHGV-0135113

Genome information

Genome length 44,164 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9534

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135113
vOTU ID	vOTU-012103
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370987
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9534
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.03
Jumbo phage	No

Genome content
Genome length	44,164 bps
GC content	26.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	84.29%
Average CDS length	665.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135113_1	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0135113_1	UniRef90	UniRef90_UPI001CA963B8	Ig-like domain-containing protein	NA
UHGV-0135113_1	eggNOG-mapper	1117108.PAALTS15_15476	CarboxypepD_reg-like domain	NA
UHGV-0135113_1	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0135113_1	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0135113_3	eggNOG-mapper	1121289.JHVL01000002_gene2453	NA	NA
UHGV-0135113_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-0135113_7	UniRef90	UniRef90_UPI00189E1B0A	phage portal protein	NA
UHGV-0135113_7	eggNOG-mapper	290402.Cbei_1370	PFAM phage portal protein, SPP1	NA
UHGV-0135113_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135113_8	eggNOG-mapper	1121289.JHVL01000002_gene2456	PFAM phage portal protein, SPP1	NA
UHGV-0135113_9	UniRef90	UniRef90_A0A317TN49	GGGtGRT protein (Fragment)	NA
UHGV-0135113_9	eggNOG-mapper	457396.CSBG_00991	GGGtGRT protein	NA
UHGV-0135113_9	Pfam	PF14057	GGGtGRT protein	GGGtGRT
UHGV-0135113_10	PHROG	phrog_7043	tail protein	tail
UHGV-0135113_10	UniRef90	UniRef90_UPI001C1DFD9D	phage tail protein	NA
UHGV-0135113_10	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0135113_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135113_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135113_10	COG	COG4926	Phage-related protein	NA
UHGV-0135113_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135113_11	UniRef90	UniRef90_A0A1C6CWB5	Phage tail protein	NA
UHGV-0135113_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135113_12	UniRef90	UniRef90_UPI000A03889D	phage tail family protein	NA
UHGV-0135113_12	eggNOG-mapper	1499683.CCFF01000017_gene2156	tail component	NA
UHGV-0135113_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135113_12	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0135113_13	PHROG	phrog_23464	NA	unknown function
UHGV-0135113_13	UniRef90	UniRef90_UPI0018AA57C8	phage tail tape measure protein	NA
UHGV-0135113_13	eggNOG-mapper	1444310.JANV01000001_gene4374	Phage tail tape measure protein	NA
UHGV-0135113_13	COG	COG3953	SLT domain protein	NA
UHGV-0135113_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0135113_15	PHROG	phrog_1021	NA	unknown function
UHGV-0135113_15	eggNOG-mapper	1443125.Z962_07950	NA	NA
UHGV-0135113_16	PHROG	phrog_885	major tail protein	tail
UHGV-0135113_16	eggNOG-mapper	411465.PEPMIC_00741	NA	NA
UHGV-0135113_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0135113_17	Structural annotation	PF20765	NA	NA
UHGV-0135113_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135113_18	UniRef90	UniRef90_UPI0008367C6B	HK97 gp10 family phage protein	NA
UHGV-0135113_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0135113_18	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0135113_19	eggNOG-mapper	1499683.CCFF01000017_gene2149	NA	NA
UHGV-0135113_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0135113_20	UniRef90	UniRef90_A0A1S8PGZ4	Phage gp6-like head-tail connector protein	NA
UHGV-0135113_20	eggNOG-mapper	573061.Clocel_3540	NA	NA
UHGV-0135113_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0135113_21	UniRef90	UniRef90_UPI00058FA11F	N4-gp56 family major capsid protein	NA
UHGV-0135113_21	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-0135113_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0135113_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135113_22	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0135113_22	UniRef90	UniRef90_UPI00058FD64F	NA	NA
UHGV-0135113_22	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-0135113_22	Pfam	PF14265	NA	DUF4355
UHGV-0135113_22	Structural annotation	PF14265	NA	NA
UHGV-0135113_23	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0135113_23	UniRef90	UniRef90_UPI000834F2A9	minor capsid protein	NA
UHGV-0135113_23	eggNOG-mapper	1499683.CCFF01000017_gene2145	Phage Mu protein F like protein	NA
UHGV-0135113_23	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0135113_23	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0135113_23	COG	COG2369	NA	NA
UHGV-0135113_23	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0135113_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0135113_24	UniRef90	UniRef90_A0A6N3FG53	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0135113_24	eggNOG-mapper	1499683.CCFF01000017_gene2144	portal protein, SPP1 Gp6-like	NA
UHGV-0135113_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135113_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0135113_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0135113_25	UniRef90	UniRef90_UPI0008339771	terminase	NA
UHGV-0135113_25	eggNOG-mapper	1443125.Z962_07895	TIGRFAM Phage	NA
UHGV-0135113_25	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0135113_25	COG	COG5362	Phage terminase large subunit	NA
UHGV-0135113_25	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0135113_27	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0135113_27	UniRef90	UniRef90_A0A7G5NTL4	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0135113_27	eggNOG-mapper	1345695.CLSA_c30000	NA	NA
UHGV-0135113_27	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0135113_32	UniRef90	UniRef90_UPI0008328BC2	GIY-YIG nuclease family protein	NA
UHGV-0135113_32	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0135113_34	PHROG	phrog_5663	NA	unknown function
UHGV-0135113_34	UniRef90	UniRef90_UPI001459D798	NA	NA
UHGV-0135113_34	eggNOG-mapper	390235.PputW619_1358	NA	NA
UHGV-0135113_34	Structural annotation	PF10386	NA	NA
UHGV-0135113_36	Pfam	PF07737	Anthrax toxin lethal factor, N- and C-terminal domain	ATLF
UHGV-0135113_37	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0135113_37	UniRef90	UniRef90_UPI0018995575	DEAD/DEAH box helicase family protein	NA
UHGV-0135113_37	eggNOG-mapper	1285586.H131_21387	Type III restriction enzyme, res subunit	NA
UHGV-0135113_37	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0135113_37	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0135113_37	Structural annotation	PF02399, MF_00964, NF003419, COG0513	NA	NA
UHGV-0135113_38	eggNOG-mapper	1304866.K413DRAFT_4746	NA	NA
UHGV-0135113_39	UniRef90	UniRef90_UPI001C10F62C	RNA dependent RNA polymerase	NA
UHGV-0135113_39	eggNOG-mapper	536233.CLO_2537	NA	NA
UHGV-0135113_39	Structural annotation	PF05183	NA	NA
UHGV-0135113_40	PHROG	phrog_29889	NA	unknown function
UHGV-0135113_40	UniRef90	UniRef90_A0A060N8P4	Dynein beta chain	NA
UHGV-0135113_44	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0135113_44	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0135113_44	UniRef90	UniRef90_A0A1C6HGA6	Predicted transcriptional regulator	NA
UHGV-0135113_44	eggNOG-mapper	1501230.ET33_26765	Transcriptional regulator	NA
UHGV-0135113_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135113_44	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0135113_48	PHROG	phrog_9996	NA	unknown function
UHGV-0135113_48	UniRef90	UniRef90_UPI001EEF2E52	replication-relaxation family protein	NA
UHGV-0135113_48	eggNOG-mapper	1415774.U728_1053	NA	NA
UHGV-0135113_48	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0135113_48	Structural annotation	PF18954, NF041423, COG1846	NA	NA
UHGV-0135113_49	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0135113_49	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0135113_49	UniRef90	UniRef90_UPI000C08A677	DEAD/DEAH box helicase family protein	NA
UHGV-0135113_49	eggNOG-mapper	1415774.U728_1054	FtsK/SpoIIIE family	NA
UHGV-0135113_49	PADLOC	SspH_00004	SspH	SSP
UHGV-0135113_49	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0135113_49	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0135113_50	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0135113_50	UniRef90	UniRef90_R6FN67	Putative DNA-biding phage protein	NA
UHGV-0135113_50	eggNOG-mapper	1321778.HMPREF1982_03519	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135113_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0135113_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135113_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135113_50	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0135113_52	UniRef90	UniRef90_UPI00058BDE67	SMI1/KNR4 family protein	NA
UHGV-0135113_52	eggNOG-mapper	411470.RUMGNA_01142	NA	NA
UHGV-0135113_52	NCBIFam	NF038335.1	YrhA family protein	NA
UHGV-0135113_53	KOfam	K06887	NA	NA
UHGV-0135113_53	PHROG	phrog_31266	NA	unknown function
UHGV-0135113_53	UniRef90	UniRef90_UPI001C0E5B98	HNH endonuclease	NA
UHGV-0135113_53	eggNOG-mapper	1034769.KB910518_gene2808	Type VI secretion system effector, Hcp	NA
UHGV-0135113_53	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0135113_54	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135113_54	UniRef90	UniRef90_UPI000DCF7B3C	helix-turn-helix domain-containing protein	NA
UHGV-0135113_54	eggNOG-mapper	1499683.CCFF01000017_gene2107	Helix-turn-helix domain	NA
UHGV-0135113_54	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0135113_55	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0135113_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0135113_55	UniRef90	UniRef90_A0A1I7JUI0	Integrase/recombinase XerD	NA
UHGV-0135113_55	eggNOG-mapper	1345695.CLSA_c30320	Belongs to the 'phage' integrase family	NA
UHGV-0135113_55	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0135113_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135113_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0135113_55	Structural annotation	PF00589, PF13495, MF_01808, TIGR02224, COG4973	NA	NA
UHGV-0135113_56	Pfam	PF14057	GGGtGRT protein	GGGtGRT