UHGV-0135150

Genome information

Genome length 24,424 bps

CDS count 44

Completeness 66.20% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135150
vOTU ID	vOTU-040007
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_393958
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.20% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.17
Jumbo phage	No

Genome content
Genome length	24,424 bps
GC content	33.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	95.12%
Average CDS length	531.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135150_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0135150_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0135150_2	UniRef90	UniRef90_U2L1B2	DNA-binding helix-turn-helix protein	NA
UHGV-0135150_2	eggNOG-mapper	1321784.HMPREF1987_01097	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135150_2	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0135150_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135150_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0135150_3	eggNOG-mapper	525255.HMPREF0077_0948	NA	NA
UHGV-0135150_4	PHROG	phrog_11939	NA	unknown function
UHGV-0135150_4	eggNOG-mapper	1121947.AUHK01000002_gene922	NA	NA
UHGV-0135150_4	Structural annotation	PF13031	NA	NA
UHGV-0135150_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0135150_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0135150_5	UniRef90	UniRef90_E1KW12	Phage antirepressor protein	NA
UHGV-0135150_5	eggNOG-mapper	525255.HMPREF0077_0424	BRO family, N-terminal domain	NA
UHGV-0135150_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0135150_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0135150_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0135150_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0135150_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0135150_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135150_11	UniRef90	UniRef90_A0A233V9S2	Recombinase RecF	NA
UHGV-0135150_11	eggNOG-mapper	1118057.CAGX01000058_gene105	nuclear chromosome segregation	NA
UHGV-0135150_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-0135150_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0135150_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0135150_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0135150_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135150_12	UniRef90	UniRef90_A0A233V9S1	Recombinase RecT	NA
UHGV-0135150_12	eggNOG-mapper	1499683.CCFF01000017_gene2606	RecT family	NA
UHGV-0135150_12	Pfam	PF03837	RecT family	RecT
UHGV-0135150_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0135150_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0135150_12	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0135150_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0135150_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0135150_13	UniRef90	UniRef90_A0A233V9R8	MBL fold metallo-hydrolase	NA
UHGV-0135150_13	eggNOG-mapper	1118055.CAGU01000029_gene41	Beta-lactamase superfamily domain	NA
UHGV-0135150_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0135150_13	dbAPIS	APIS001	NA	NA
UHGV-0135150_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0135150_13	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0135150_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135150_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135150_14	UniRef90	UniRef90_A0A7D4FW30	Single-stranded DNA-binding protein	NA
UHGV-0135150_14	eggNOG-mapper	334413.FMG_1140	Single-stranded DNA-binding protein	NA
UHGV-0135150_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135150_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135150_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135150_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135150_14	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0135150_15	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0135150_15	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0135150_15	UniRef90	UniRef90_A0A2N6SUG4	DNA replication protein DnaD	NA
UHGV-0135150_15	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-0135150_15	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0135150_15	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0135150_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135150_15	Structural annotation	PF09681, TIGR01446, NF033788, COG3935	NA	NA
UHGV-0135150_16	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135150_16	UniRef90	UniRef90_A0A6I2QU14	NA	NA
UHGV-0135150_16	eggNOG-mapper	879308.HMPREF9130_0415	NA	NA
UHGV-0135150_16	Pfam	PF06356	NA	DUF1064
UHGV-0135150_16	Structural annotation	PF06356	NA	NA
UHGV-0135150_17	UniRef90	UniRef90_B0S4B3	DarA_C domain-containing protein	NA
UHGV-0135150_17	Pfam	PF18789	Defence against restriction A C-terminal	DarA_C
UHGV-0135150_17	Structural annotation	PF18789	NA	NA
UHGV-0135150_20	PHROG	phrog_3784	NA	unknown function
UHGV-0135150_20	eggNOG-mapper	1118055.CAGU01000029_gene35	NA	NA
UHGV-0135150_22	UniRef90	UniRef90_F0H2E1	Conserved domain protein	NA
UHGV-0135150_23	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135150_23	UniRef90	UniRef90_UPI0003182729	MazG-like family protein	NA
UHGV-0135150_23	eggNOG-mapper	1118055.CAGU01000029_gene23	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0135150_23	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0135150_23	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0135150_23	Structural annotation	PF12643, MF_01019, NF001613, COG1694	NA	NA
UHGV-0135150_24	PHROG	phrog_16126	NA	unknown function
UHGV-0135150_26	eggNOG-mapper	1033744.CAEL01000029_gene1288	NA	NA
UHGV-0135150_26	Structural annotation	TIGR01636	NA	NA
UHGV-0135150_27	UniRef90	UniRef90_UPI0006D787EE	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0135150_27	eggNOG-mapper	471875.RUMLAC_01752	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0135150_27	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0135150_27	Structural annotation	COG1724	NA	NA
UHGV-0135150_28	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0135150_28	PHROG	phrog_33232	NA	unknown function
UHGV-0135150_28	UniRef90	UniRef90_UPI0006D7CCEE	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0135150_28	eggNOG-mapper	986075.CathTA2_0998	HicB family	NA
UHGV-0135150_28	Pfam	PF05534	HicB family	HicB
UHGV-0135150_28	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0135150_28	Structural annotation	PF15919, COG1598, COG4691	NA	NA
UHGV-0135150_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0135150_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0135150_29	UniRef90	UniRef90_E1KWJ4	Terminase small subunit	NA
UHGV-0135150_29	eggNOG-mapper	365659.smi_0442	Terminase, small subunit	NA
UHGV-0135150_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135150_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0135150_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0135150_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135150_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0135150_30	UniRef90	UniRef90_E1KWJ3	Phage terminase, large subunit, PBSX family	NA
UHGV-0135150_30	eggNOG-mapper	562981.HMPREF0428_01824	Phage terminase, large subunit	NA
UHGV-0135150_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0135150_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0135150_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135150_30	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135150_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0135150_31	UniRef90	UniRef90_E1KWJ2	Phage portal protein, SPP1 family	NA
UHGV-0135150_31	eggNOG-mapper	1347392.CCEZ01000005_gene1230	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0135150_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135150_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0135150_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0135150_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0135150_32	UniRef90	UniRef90_E1KWJ1	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0135150_32	eggNOG-mapper	1123230.ARQJ01000027_gene1335	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0135150_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0135150_32	Pfam	PF21814	NA	DUF6883
UHGV-0135150_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0135150_32	COG	COG2369	NA	NA
UHGV-0135150_32	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0135150_33	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0135150_34	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0135150_34	UniRef90	UniRef90_UPI0010FDF100	NA	NA
UHGV-0135150_34	eggNOG-mapper	1347392.CCEZ01000005_gene1235	NA	NA
UHGV-0135150_34	Pfam	PF14265	NA	DUF4355
UHGV-0135150_34	Structural annotation	PF14265	NA	NA
UHGV-0135150_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0135150_35	UniRef90	UniRef90_R9C6R9	NA	NA
UHGV-0135150_35	eggNOG-mapper	1232430.CAVG010000113_gene1021	NA	NA
UHGV-0135150_35	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0135150_36	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0135150_36	UniRef90	UniRef90_UPI0008D9D418	phage head-tail connector protein	NA
UHGV-0135150_36	eggNOG-mapper	1147042.H9A0V3_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0135150_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0135150_36	Structural annotation	PF05135	NA	NA
UHGV-0135150_37	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0135150_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0135150_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135150_38	UniRef90	UniRef90_E1KWI4	Phage protein, HK97 gp10 family	NA
UHGV-0135150_38	eggNOG-mapper	1235798.C817_03473	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0135150_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0135150_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0135150_38	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0135150_39	PHROG	phrog_176	tail terminator	connector
UHGV-0135150_39	UniRef90	UniRef90_A0A396QDB6	NA	NA
UHGV-0135150_39	eggNOG-mapper	1423724.BAMM01000023_gene1906	NA	NA
UHGV-0135150_39	Structural annotation	PF11367	NA	NA
UHGV-0135150_40	PHROG	phrog_238	major tail protein	tail
UHGV-0135150_40	UniRef90	UniRef90_E1KWI2	Phage major tail protein, TP901-1 family	NA
UHGV-0135150_40	eggNOG-mapper	565664.EFXG_01173	Phage tail tube protein	NA
UHGV-0135150_40	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0135150_40	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0135150_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135150_41	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0135150_41	UniRef90	UniRef90_UPI000C1BF932	tail assembly chaperone	NA
UHGV-0135150_41	eggNOG-mapper	682370.C9W9I6_9CAUD	Pfam:Phage_TAC_12	NA
UHGV-0135150_41	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0135150_41	Structural annotation	PF12363	NA	NA
UHGV-0135150_43	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0135150_43	UniRef90	UniRef90_E1KWH9	Phage tail tape measure protein, TP901 family	NA
UHGV-0135150_43	eggNOG-mapper	879308.HMPREF9130_0859	Phage-related minor tail protein	NA
UHGV-0135150_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135150_43	Pfam	PF05017	TMP repeat	TMP
UHGV-0135150_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0135150_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0135150_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA